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Report for CCDS18755.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18755.1 Public Mus musculus 4 Pigv 23 108 98 CCDS HistoryNCBI Gene:230801Re-query CCDS DB by CCDS ID:18755.1Re-query CCDS DB by GeneID:230801See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18755.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062118.10 ENSMUSP00000050647.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062118.10Link to Ensembl Protein Viewer:ENSMUSP00000050647.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062118Re-query CCDS DB by Protein ID:ENSMUSP00000050647
Original member Current member NCBI NM_001356466.1 NP_001343395.1 Accepted alive Link to Nucleotide Sequence:NM_001356466.1Link to Protein Sequence:NP_001343395.1Re-query CCDS DB by Nucleotide ID:NM_001356466Re-query CCDS DB by Protein ID:NP_001343395Link to BLAST:NP_001343395.1
Original member Current member NCBI NM_178698.5 NP_848813.3 Accepted alive Link to Nucleotide Sequence:NM_178698.5Link to Protein Sequence:NP_848813.3Re-query CCDS DB by Nucleotide ID:NM_178698Re-query CCDS DB by Protein ID:NP_848813Link to BLAST:NP_848813.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343395.1 493 Q7TPN3-1 493 100% 0 0
NP_848813.3 493 Q7TPN3-1 493 100% 0 0

Chromosomal Locations for CCDS 18755.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133662510 133662791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133664658 133665779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133669738 133669815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGGACTCCTGGACCCATCCCAGAAAGAGGTGCTGAGATTCGCAGTAAACTGCCGCATCCTGACTCTAG
TGCTACAGGCACTCTTCAACCTCATCATCCCAGATCACCACGCAGATGCCTTTTGCCCTCCCCGCCTCGC
CCCCTCGGGCTCTGCGGATCAGCTTGTGGAAGGTCTTCTGGGTGGTCTGTCTCGATGGGATGCTGAACAC
TTCCTGTTTATCGCTGAGCACGGCTACCTTTATGAGCACAACTTTGCCTTCTTCCCTGGCTTTCCCTTGG
CCCTGCTGATGGGGACTGAGCTGCTGAGACCCTTGCAGGGCCTCTTGAGCCAGCGCAGTTGCCTGCTGGT
CTCAGTAGCACTTCTCAACTTGCTGTTCTCCGTGCTGGCTGCAGTGGCACTCCATGACTTGGGTTGTCTG
GTTCTGCACTGTCCTCGGCAGGCCTTGTGTGCAGCGTTGCTCTTCTGCATCAGTCCTGCCAACGTTTTCC
TGGCAGCCGGCTACTCAGAGGCTTTGTTTGCCTTCCTGACGTTCAGCGCCATGGGGCAGCTGGAGAGGGG
CCGTGGCTGGGCTAGTGGGCTGCTCTTTGCTCTTGCTGCTGGGGTGCGCTCCAATGGGCTGGTGAGCCTT
GGCTTCCTCCTGCACTCCCAGTGCAGAGGCTTTTGTTCCTCTCTGGCGGTGCTGAGCCCCTGGAAGCCCC
TCGTGAAGCTGATGGCCTCTGTGTGCTTGTCAGTGCTCATAGTCAGCCTTCCCTTCGCCCTCTTTCAGTA
TCGTGCCTACATCCAGTTCTGCTCACCAGGCTCAGCCCCCTCCATCCCTGAGCCCTTGCTGCAGCTAGCT
GCCGACAAAGGCTACCGGCTTGCAGGAGAAAATGCACCCCCATGGTGCTCCTGGGACCTTCCTCTAATAT
ACAACTATATTCAGGATGTCTACTGGAATGTTGGTCTTCTGCGATACTATGAGCTCAAACAGGTGCCCAA
TTTCCTACTAGCTACACCAGTGACAGTACTGGTTGTGTGGGCAACCTGGACATATGTGACCACCCACCCT
TGGCTCTGCCTTACACTTGGGCTGCAAAGAACCAAGGACAGGGAGAACCCGGAGAAGCCCCACCGTGGCT
TCCTGAGTCCGAAGGTGTTTGTGTACCTGGTCCACGCTGCAGCACTGCTGGTCTTTGGAGGTCTGTGCAT
GCATGTCCAGGTTCTCACGCGGTTTTTGGCCTCTTCCACTCCTATCATGTACTGGTTTCCAGCTCACCTG
CTTCAGGATCAAGAACCGCTGCTGAGGTGTGTGGACACAGAGCCTGGGAAGCTTCCTCAGGAGAAGTCCC
CACCAGGACAGAAGGCCCCCAGAAACTGTCTCATGAAACTCTTCTACGATTGGAAGAGATGCTCTCCAGT
CACAAGATGCGTTCTGGTCTACTTCCTGACCTACTGGCTTCTGGGACTAATTCTCCATTGCAACTTCCTG
CCTTGGACTTGA

Translation (493 aa):
MGLLDPSQKEVLRFAVNCRILTLVLQALFNLIIPDHHADAFCPPRLAPSGSADQLVEGLLGGLSRWDAEH
FLFIAEHGYLYEHNFAFFPGFPLALLMGTELLRPLQGLLSQRSCLLVSVALLNLLFSVLAAVALHDLGCL
VLHCPRQALCAALLFCISPANVFLAAGYSEALFAFLTFSAMGQLERGRGWASGLLFALAAGVRSNGLVSL
GFLLHSQCRGFCSSLAVLSPWKPLVKLMASVCLSVLIVSLPFALFQYRAYIQFCSPGSAPSIPEPLLQLA
ADKGYRLAGENAPPWCSWDLPLIYNYIQDVYWNVGLLRYYELKQVPNFLLATPVTVLVVWATWTYVTTHP
WLCLTLGLQRTKDRENPEKPHRGFLSPKVFVYLVHAAALLVFGGLCMHVQVLTRFLASSTPIMYWFPAHL
LQDQEPLLRCVDTEPGKLPQEKSPPGQKAPRNCLMKLFYDWKRCSPVTRCVLVYFLTYWLLGLILHCNFL
PWT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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