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Report for CCDS18771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18771.1 Public Mus musculus 4 Pafah2 23 108 98 CCDS HistoryNCBI Gene:100163Re-query CCDS DB by CCDS ID:18771.1Re-query CCDS DB by GeneID:100163See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105869.8 ENSMUSP00000101495.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105869.8Link to Ensembl Protein Viewer:ENSMUSP00000101495.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105869Re-query CCDS DB by Protein ID:ENSMUSP00000101495
Original member Current member NCBI NM_001285874.1 NP_001272803.1 Accepted alive Link to Nucleotide Sequence:NM_001285874.1Link to Protein Sequence:NP_001272803.1Re-query CCDS DB by Nucleotide ID:NM_001285874Re-query CCDS DB by Protein ID:NP_001272803Link to BLAST:NP_001272803.1
Original member Current member NCBI NM_133880.3 NP_598641.2 Accepted alive Link to Nucleotide Sequence:NM_133880.3Link to Protein Sequence:NP_598641.2Re-query CCDS DB by Nucleotide ID:NM_133880Re-query CCDS DB by Protein ID:NP_598641Link to BLAST:NP_598641.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272803.1 390 Q8VDG7 390 100% 0 0
NP_598641.2 390 Q8VDG7 390 100% 0 0

Chromosomal Locations for CCDS 18771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134403015 134403104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134404093 134404243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134405006 134405102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134410904 134410972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134411767 134411905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134413342 134413455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134418042 134418133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134419869 134420039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134422378 134422532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134425473 134425567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGGGGCCGGCCAGTCTGTGTGCTTCCCACCCATCTCGGGACCCCACCACATTGGCTGCACGGATGTGA
TGGAGGGTCACAGTCTTGAGGGGAGCCTCTTCCGACTCTTCTACCCTTGCCAAGCATCAGAGAAGTGCGA
GCAGCCCCTGTGGATTCCCCGCTACGAGTACAGCATGGGTCTGGCCGATTACCTGCAGTATAACAAGCGC
TGGGTGGGGTTGCTGTTCAACGTGGGTATCGGATCTTGTCGCTTGCCTGTTAGCTGGAACGGCCCCTTTA
AGGCAAAGGAGTCTGGATACCCTTTGATCATCTTGTCCCATGGTCTAGGAGGGTTCAGGGCGTCATACTC
GGCCTTCTGCATGGAGCTGGCCTCTCGTGGCTTTGTGGTTGCTGCCGTAGAGCACAGGGACCAGTCAGCT
GCGGCCACCTACTTCTGCAAGCCGACCTCCCAGGAGAGCTCTCCCGCTGAATCTCTGGAGGAGGAGTGGC
TCCCCTTCCGTCGCATCAAGGAAGGGGAGAAGGAGTTCCACGTCAGGAATCCTCAGGTGCACCAGCGGGT
GAAAGAGTGTGTGCGAGTGCTGCGGATCCTTCAGGACGCCTCTGCTGGGAAGACTGTCGTCAATGTCTTC
CCAGGAGGACTGGATCTGATGACCTTGAAGGGCAGCATCGACAGGAACCGCGTAGCCGTGATGGGTCACT
CCTTTGGAGGAGCTACGGCTGTTCTTGCTTTGACCCAGGAGGTCCAGTTTCGGTGTGCTATAGCCCTGGA
CGCTTGGATGTTCCCTCTGGAACGGGACTTTTACCCCAAAGCCCGGGGCCCTGTGTTCTTTATCAACGTC
GAGAAATTCCAGACGGTAGAGAGCGTCAACTTGATGAAGAAGATCTGTGCCCAGCACGAGCAGTCCAGGA
TCGTGACTGTCCTAGGCGCTGTTCATCGGAGTCAAACTGACTTTGCCTTTGTGACGGGCAACCTGATTGC
TAAATTCTTTTCCAGTAACTCTCGTGGTACCTTGGACCCTTACGAAAGTCAGGAGGTCATGGTGAGGGCC
ATCTTGGCCTTCCTGCAGAAGCACCTTGACCTGAAGGAAGACTACGATCAATGGAGCAGCTTCATCGAAG
GCGTCGGACCATCGCTCATCCAAGGGGCCCCGCACTATCTGTCTAGTCTATAG

Translation (390 aa):
MGAGQSVCFPPISGPHHIGCTDVMEGHSLEGSLFRLFYPCQASEKCEQPLWIPRYEYSMGLADYLQYNKR
WVGLLFNVGIGSCRLPVSWNGPFKAKESGYPLIILSHGLGGFRASYSAFCMELASRGFVVAAVEHRDQSA
AATYFCKPTSQESSPAESLEEEWLPFRRIKEGEKEFHVRNPQVHQRVKECVRVLRILQDASAGKTVVNVF
PGGLDLMTLKGSIDRNRVAVMGHSFGGATAVLALTQEVQFRCAIALDAWMFPLERDFYPKARGPVFFINV
EKFQTVESVNLMKKICAQHEQSRIVTVLGAVHRSQTDFAFVTGNLIAKFFSSNSRGTLDPYESQEVMVRA
ILAFLQKHLDLKEDYDQWSSFIEGVGPSLIQGAPHYLSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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