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Report for CCDS18795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18795.1 Public Mus musculus 4 Hmgcl 23 108 98 CCDS HistoryNCBI Gene:15356Re-query CCDS DB by CCDS ID:18795.1Re-query CCDS DB by GeneID:15356See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030432.7 ENSMUSP00000030432.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030432.7Link to Ensembl Protein Viewer:ENSMUSP00000030432.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030432Re-query CCDS DB by Protein ID:ENSMUSP00000030432
Original member NCBI NM_008254.3 NP_032280.2 Updated not alive Link to Nucleotide Sequence:NM_008254.3Link to Protein Sequence:NP_032280.2Re-query CCDS DB by Nucleotide ID:NM_008254Re-query CCDS DB by Protein ID:NP_032280
Current member NCBI NM_008254.4 NP_032280.2 Accepted alive Link to Nucleotide Sequence:NM_008254.4Link to Protein Sequence:NP_032280.2Re-query CCDS DB by Nucleotide ID:NM_008254Re-query CCDS DB by Protein ID:NP_032280Link to BLAST:NP_032280.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032280.2 325 P38060 325 100% 0 0

Chromosomal Locations for CCDS 18795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135946481 135946540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135950550 135950633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135952371 135952478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135953857 135953952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135955587 135955735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135958723 135958786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135959977 135960165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135960783 135960908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135962109 135962210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCGTCAGTGAGGAAGGCTTTCCCGCGGAGGCTGGTGGGCTTGACGTCCCTCCGGGCTGTGAGCACCT
CCTCCATGGGCACTTTGCCAAAGCAGGTGAAGATCGTGGAAGTCGGTCCCCGAGATGGGCTGCAGAATGA
AAAGAGTATTGTACCCACCCCAGTGAAGATCAGGCTGATCGACATGCTTTCCGAAGCAGGGCTCCCCGTG
ATCGAGGCCACCAGCTTTGTTTCTCCCAAGTGGGTGCCACAGATGGCTGACCACTCTGACGTCTTGAAGG
GCATTCAGAAGTTTCCCGGCATCAACTACCCAGTCCTGACTCCAAACATGAAAGGCTTTGAGGAAGCGGT
AGCTGCGGGTGCCAAGGAAGTGAGCGTCTTCGGTGCTGTGTCTGAGCTCTTCACCCGGAAGAACGCGAAC
TGCTCTATAGAGGAGAGTTTCCAGCGCTTTGCTGGAGTCATGCAGGCGGCCCAGGCCGCCAGCATCTCTG
TGAGAGGGTATGTCTCCTGTGCCCTCGGATGCCCCTACGAGGGGAAGGTCTCCCCGGCTAAAGTTGCTGA
GGTTGCCAAGAAGTTGTACTCGATGGGCTGCTATGAGATCTCCCTTGGGGACACCATCGGCGTAGGTACC
CCAGGACTCATGAAAGACATGCTGACTGCTGTCATGCATGAAGTGCCTGTGACAGCATTGGCTGTCCACT
GCCATGATACCTATGGTCAAGCTCTGGCCAACACCTTGGTGGCCCTGCAGATGGGTGTGAGTGTTGTGGA
CTCCTCTGTGGCAGGACTTGGAGGCTGTCCCTATGCAAAAGGGGCATCAGGGAACTTGGCTACTGAGGAC
CTGGTCTACATGCTGAATGGCTTAGGGATTCACACGGGTGTGAACCTCCAGAAACTTCTAGAAGCTGGGG
ACTTCATCTGTCAAGCCCTTAACAGAAAAACTAGTTCCAAAGTGGCACAGGCCACCTGCAAGCTCTGA

Translation (325 aa):
MASVRKAFPRRLVGLTSLRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPV
IEATSFVSPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSVFGAVSELFTRKNAN
CSIEESFQRFAGVMQAAQAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMGCYEISLGDTIGVGT
PGLMKDMLTAVMHEVPVTALAVHCHDTYGQALANTLVALQMGVSVVDSSVAGLGGCPYAKGASGNLATED
LVYMLNGLGIHTGVNLQKLLEAGDFICQALNRKTSSKVAQATCKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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