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Report for CCDS19019.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19019.1 Public Mus musculus 4 Pank4 23 108 98 CCDS HistoryNCBI Gene:269614Re-query CCDS DB by CCDS ID:19019.1Re-query CCDS DB by GeneID:269614See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19019.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030931.10 ENSMUSP00000030931.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030931.10Link to Ensembl Protein Viewer:ENSMUSP00000030931.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030931Re-query CCDS DB by Protein ID:ENSMUSP00000030931
Original member NCBI NM_172990.5 NP_766578.2 Updated not alive Link to Nucleotide Sequence:NM_172990.5Link to Protein Sequence:NP_766578.2Re-query CCDS DB by Nucleotide ID:NM_172990Re-query CCDS DB by Protein ID:NP_766578
Current member NCBI NM_172990.6 NP_766578.2 Accepted alive Link to Nucleotide Sequence:NM_172990.6Link to Protein Sequence:NP_766578.2Re-query CCDS DB by Nucleotide ID:NM_172990Re-query CCDS DB by Protein ID:NP_766578Link to BLAST:NP_766578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766578.2 773 Q80YV4-2 773 100% 0 0

Chromosomal Locations for CCDS 19019.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154964146 154964269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154969130 154969212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154969573 154969787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154969994 154970177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154970447 154970539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154970874 154971027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154971373 154971554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154972149 154972230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154972469 154972569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154974630 154974785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154976262 154976374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154976583 154976670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154977203 154977354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154978151 154978206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154978393 154978442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154978921 154979025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154979492 154979592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154979726 154979794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154980495 154980708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2322 nt):
ATGGCGGAGCGTGGAGCGAGTGGCGGCGGGAGCGGCGGGGACAGTCTGGACAAGAGCATCACGCTGCCCC
CCGACGAGATCTTCCGCAACCTGGAGAACGCCAAGCGCTTCGCCATTGATATAGGTGGATCATTGACCAA
GTTGGCATACTATTCCACCGTACAGCACAAAGTGGCCAAAGTGAGATCTTTTGACCACCCGGGAAAGGAC
GTGGAGCAGGATCATGAGCCACCCTATGAGATCTCAGTCCAGGAGGAGATCACAGCTCGCCTGCATTTCA
TCAAGTTTGAGAATACCTACATGGAAGCCTGCCTGGACTTCATCAGAGACCACCTAGTCAACACTGAGAC
CAAGGTCATCCAGGCCACTGGGGGTGGAGCCTACAAGTTCAAGGACCTCATCGAGGAGAAGCTGCGTCTG
AAGGTGGACAAAGAGGATGTAATGACCTGCTTGATTAAAGGGTGCAACTTCGTGCTGAAGAACATCCCGC
ATGAGGCCTTCATGTACCAGAAAGACTCAGACCCAGAGTTTCGATTTCAGACAAATCACCCCAACATCTT
CCCCTACCTCCTAGTCAACATTGGCTCTGGCGTCTCCATCGTGAAGGTGGAGACAGAGGACCGGTTTGAG
TGGATTGGTGGAAGCTCCATTGGAGGAGGCACCTTCTGGGGCCTCGGGGCTCTGCTCACCAAAACAAAGA
AGTTTGATGAGCTGCTGCAGCTGGCTTCCAGAGGCCGGCATGCCAACGTTGACATGCTGGTCCAGGACAT
CTATGGTGGGGCCCACCAGACCCTGGGCCTGAGTGGCAATCTCATCGCAAGCAGTTTTGGGAAGTCAGCC
ACTGCTGACAGAGAGTTCTCCAAAGAAGACATGGCCAAGAGCCTGCTGCACATGATCAGCAATGACATCG
GGCAGCTCGCCTGTCTGTACGCCAAGCTCCACGGCTTGGACAGGGTCTACTTTGGGGGCTTCTTCATCCG
GGGTCACCCCGTGACCATGCGCACAATCACCTACAGCATTAACTTCTTCTCCAAGGGTGAAGTCCAGGCA
CTCTTCCTGAGACATGAAGGCTACCTGGGAGCCATCGGGGCATTTTTAAAAGGAGCCGAGCAAGACAATC
CTAACCAGTACAGCTGGGGTGAGAACTACGCAGCCAGCTCCGGGCTGATGAGCACGTCGCCCGAGCTGTG
CCCGACACAGCGGGCAAGGAGCGGCACATTTGACCTGCTGGAAATGGACCGGCTGGAGAGGCCCCTGGTC
AACCTGCCCCTCCTCCTGGACCCGTCCTCCTATGTGCCTGACACAGTAGACCTCACTGATGATGCTCTGG
CCCGTCAGTACTGGCTCACGTGCTTTGAGGAGGCCCTGGATGGGGTGGTGAAGCGAGCTGTGGCCAGCCA
GCCAGAGTCCATGGATGCAGTTGAGAGGGCAGAGAAATTCCGGCAGAAATACTGGGGCAAACTGCAGACC
CTCCGGCACCAGCCCTTTGCTTATGGGACACTGACTGTGCGCAGCCTGTTGGACACAAGAGAACACTGTT
TGAATGAATTCAACTTCCCAGATCCCTACTCCAAGGTGAAGCAGAAAGAAAACGGCCTCGCACTAAAATG
CTTTCAGAGCGTGACGCGCTCGCTGGACTCACTAGGCTGGGAAGAGCGGCAGCTGGCCCTGGTGAAGGGG
CTCTTAGCTGGGAATGTCTTTGACTGGGGAGCCAAGGCTGTGTCTGATGTCCTGGAATCGGACCCCCAGT
TTGGGTTTGAAGAAGCAAAGAGAAAATTGCAAGAACGGCCCTGGCTCGTGGATTCCTACACCAAGTGGCT
CCAGAGGTTAAAGGGGCCCCCTCATAAATGTGCCTTAATTTTCGCAGATAACAGTGGAATAGACATCATT
TTGGGAGTCTTCCCCTTTGTCAGGGAGCTACTCTTTAGAGGGACAGAGGTCATCTTGGCATGCAACTCAG
GCCCTGCCCTGAACGATGTGACCTACAGTGAGTCTCTCATTGTGGCAGAACGCATTGCAGCCATGGACCC
CATCATCTGCACTGCTCTGAGAGAAGATAGGCTGCTGCTGGTGCAGACCGGTTCCAGCTCTCCATGCCTA
GACCTCAGCCGTCTAGACAAGGGACTGGCTGTGCTGGTGCGAGAGCGTGGTGCCGACCTGGTCGTCATCG
AGGGAATGGGCCGTGCCATCCACACCAACTACCATGCATTGCTGCGCTGCGAGAGTCTGAAGCTGGCAGT
GGTAAAGAACGCTTGGCTGGCAGAGCGTCTAGGTGGCCAGCTCTTCAGTGTCATCTTCAAGTACGAGGTT
CCTACCAAGTGA

Translation (773 aa):
MAERGASGGGSGGDSLDKSITLPPDEIFRNLENAKRFAIDIGGSLTKLAYYSTVQHKVAKVRSFDHPGKD
VEQDHEPPYEISVQEEITARLHFIKFENTYMEACLDFIRDHLVNTETKVIQATGGGAYKFKDLIEEKLRL
KVDKEDVMTCLIKGCNFVLKNIPHEAFMYQKDSDPEFRFQTNHPNIFPYLLVNIGSGVSIVKVETEDRFE
WIGGSSIGGGTFWGLGALLTKTKKFDELLQLASRGRHANVDMLVQDIYGGAHQTLGLSGNLIASSFGKSA
TADREFSKEDMAKSLLHMISNDIGQLACLYAKLHGLDRVYFGGFFIRGHPVTMRTITYSINFFSKGEVQA
LFLRHEGYLGAIGAFLKGAEQDNPNQYSWGENYAASSGLMSTSPELCPTQRARSGTFDLLEMDRLERPLV
NLPLLLDPSSYVPDTVDLTDDALARQYWLTCFEEALDGVVKRAVASQPESMDAVERAEKFRQKYWGKLQT
LRHQPFAYGTLTVRSLLDTREHCLNEFNFPDPYSKVKQKENGLALKCFQSVTRSLDSLGWEERQLALVKG
LLAGNVFDWGAKAVSDVLESDPQFGFEEAKRKLQERPWLVDSYTKWLQRLKGPPHKCALIFADNSGIDII
LGVFPFVRELLFRGTEVILACNSGPALNDVTYSESLIVAERIAAMDPIICTALREDRLLLVQTGSSSPCL
DLSRLDKGLAVLVRERGADLVVIEGMGRAIHTNYHALLRCESLKLAVVKNAWLAERLGGQLFSVIFKYEV
PTK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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