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Report for CCDS19155.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19155.1 Public Mus musculus 5 Hadha 23 108 98 CCDS HistoryNCBI Gene:97212Re-query CCDS DB by CCDS ID:19155.1Re-query CCDS DB by GeneID:97212See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19155.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156859.2 ENSMUSP00000120976.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156859.2Link to Ensembl Protein Viewer:ENSMUSP00000120976.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156859Re-query CCDS DB by Protein ID:ENSMUSP00000120976
Original member Current member NCBI NM_178878.3 NP_849209.1 Accepted alive Link to Nucleotide Sequence:NM_178878.3Link to Protein Sequence:NP_849209.1Re-query CCDS DB by Nucleotide ID:NM_178878Re-query CCDS DB by Protein ID:NP_849209Link to BLAST:NP_849209.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849209.1 763 Q8BMS1 763 100% 0 0

Chromosomal Locations for CCDS 19155.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30119815 30119960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30120045 30120190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30120688 30120802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30121338 30121533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30122150 30122218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30122621 30122761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30123608 30123694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30126565 30126736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30128800 30128934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30129821 30129930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30132240 30132296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30134058 30134176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30134979 30135101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30140949 30141051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30142719 30142838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30144159 30144297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30145235 30145368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30147346 30147416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30147980 30148021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30154882 30154948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2292 nt):
ATGGTGGCGTCCCGGGCGATTGGCAGTCTCAGTCGCTTCTCTGCCTTCAGGATCCTACGCTCCAGAGGCT
GCATTTGCCGCAGCTTTACAACGTCTTCTGCTCTGCTGACCAGAACCCATATTAATTATGGCGTCAAAGG
GGATGTGGCAGTTATTCGGATTAACTCACCCAATTCAAAGGTAAATACATTGAATAAAGAAGTACAGTCA
GAGTTCATAGAAGTCATGAACGAAATCTGGGCCAACGACCAAATCAGGAGTGCTGTCCTTATCTCATCAA
AGCCTGGCTGCTTTGTCGCAGGGGCTGACATCAACATGCTATCCTCTTGTACAACCCCCCAAGAAGCAAC
ACGAATATCACAGGAAGGTCAGAGAATGTTTGAGAAACTTGAAAAGTCCCCAAAGCCCGTTGTGGCCGCC
ATCAGTGGATCCTGCTTGGGAGGAGGACTTGAGCTTGCCATAGCATGCCAATACAGAATAGCAACAAAAG
ACAGAAAAACAGTATTAGGTGTCCCTGAAGTGTTGCTGGGGATCTTACCAGGAGCCGGAGGTACCCAGAG
ACTGCCCAAAATGGTGGGTGTGCCTGCTGCATTTGACATGATGCTGACTGGCAGGAACATTCGTGCAGAC
AGAGCAAAGAAAATGGGACTGGTTGACCAGTTGGTGGAACCGCTGGGACCAGGAATAAAATCACCAGAAG
AAAGGACAATTGAATACCTAGAGGAAGTTGCAGTTAATTTTGCCAAAGGCCTGGCTGATCGGAAAGTCTC
TGCAAAGCAGAGCAAAGGCCTTGTGGAAAAGCTGACAACGTATGCCATGACTGTCCCATTTGTCAGACAA
CAGGTTTACAAAACAGTTGAAGAAAAAGTGAAGAAGCAGACTAAAGGCCTTTATCCTGCCCCTTTGAAAA
TAATTGATGCTGTGAAGGCTGGACTTGAGCAAGGCAGTGACGCTGGTTATCTTGCTGAATCGCAGAAATT
TGGAGAGCTTGCATTGACCAAAGAATCGAAGGCCCTGATGGGGCTTTATAACGGCCAGGTCCTGTGCAAG
AAAAATAAATTTGGAGCACCACAGAAGAACGTTCAGCAGCTAGCCATCCTTGGCGCAGGGCTGATGGGGG
CTGGCATTGCCCAGGTCTCTGTGGATAAGGGACTGAAAACTCTTCTTAAAGACACCACAGTGACGGGGCT
GGGCCGGGGACAGCAGCAAGTGTTCAAAGGGCTGAACGACAAAGTGAAGAAGAAAGCTCTCACATCATTT
GAAAGGGATTCCATCTTCAGCAACTTGATTGGGCAGCTGGATTACAAAGGCTTTGAGAAGGCCGACATGG
TGATTGAGGCTGTGTTTGAGGACCTCGGTGTAAAGCACAAAGTGTTAAAGGAAGTGGAAAGCGTGACTCC
AGAACACTGTATCTTTGCCAGCAACACATCTGCTCTCCCAATCAATCAAATTGCTGCTGTCAGCAAAAGG
CCTGAGAAGGTGATCGGCATGCACTACTTCTCCCCCGTGGACAAGATGCAGCTCCTAGAAATCATCACCA
CTGACAAAACCTCCAAGGACACAACGGCCTCTGCCGTGGCCGTGGGGCTCAGGCAAGGGAAGGTCATCAT
TGTGGTCAAGGACGGACCCGGCTTCTACACCACCAGGTGTCTTGCACCCATGATGTCTGAAGTCATGCGA
ATCCTCCAGGAAGGAGTTGACCCTAAGAAGCTGGACGCCTTGACCACAGGTTTCGGCTTCCCTGTGGGTG
CTGCCACGCTGGCAGACGAAGTGGGTGTGGATGTAGCACAGCACGTAGCAGAAGATCTAGGCAAAGCCTT
TGGGGAGCGATTTGGAGGTGGCAGCGTAGAACTGCTGAAACAGATGGTCTCCAAGGGCTTCTTAGGTCGC
AAGTCTGGGAAGGGCTTTTACATCTATCAGGAGGGCTCAAAGAATAAGAGTTTGAATTCTGAAATGGATA
ATATCTTGGCAAATCTGAGGCTGCCTGCCAAGCCCGAGGTCTCCTCTGATGAAGACGTCCAATACCGTGT
GATAACAAGGTTCGTGAACGAGGCAGTCCTGTGCCTACAGGAAGGGATCCTGGCCACACCGGCAGAGGGA
GACATCGGAGCTGTCTTTGGGCTTGGCTTTCCCCCTTGTCTCGGAGGGCCCTTCCGCTTTGTGGATCTGT
ATGGTGCTCAGAAGGTAGTGGACCGGCTACGGAAGTACGAGTCTGCCTATGGAACACAGTTTACCCCATG
CCAGCTGCTCCTCGACCACGCTAACAACTCTAGCAAGAAGTTCTACCAGTGA

Translation (763 aa):
MVASRAIGSLSRFSAFRILRSRGCICRSFTTSSALLTRTHINYGVKGDVAVIRINSPNSKVNTLNKEVQS
EFIEVMNEIWANDQIRSAVLISSKPGCFVAGADINMLSSCTTPQEATRISQEGQRMFEKLEKSPKPVVAA
ISGSCLGGGLELAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRAD
RAKKMGLVDQLVEPLGPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLVEKLTTYAMTVPFVRQ
QVYKTVEEKVKKQTKGLYPAPLKIIDAVKAGLEQGSDAGYLAESQKFGELALTKESKALMGLYNGQVLCK
KNKFGAPQKNVQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQQQVFKGLNDKVKKKALTSF
ERDSIFSNLIGQLDYKGFEKADMVIEAVFEDLGVKHKVLKEVESVTPEHCIFASNTSALPINQIAAVSKR
PEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAVGLRQGKVIIVVKDGPGFYTTRCLAPMMSEVMR
ILQEGVDPKKLDALTTGFGFPVGAATLADEVGVDVAQHVAEDLGKAFGERFGGGSVELLKQMVSKGFLGR
KSGKGFYIYQEGSKNKSLNSEMDNILANLRLPAKPEVSSDEDVQYRVITRFVNEAVLCLQEGILATPAEG
DIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYESAYGTQFTPCQLLLDHANNSSKKFYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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