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Report for CCDS19169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19169.1 Public Mus musculus 5 Slc5a6 23 108 98 CCDS HistoryNCBI Gene:330064Re-query CCDS DB by CCDS ID:19169.1Re-query CCDS DB by GeneID:330064See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080431.7 ENSMUSP00000079291.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080431.7Link to Ensembl Protein Viewer:ENSMUSP00000079291.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000080431Re-query CCDS DB by Protein ID:ENSMUSP00000079291
Original member Current member EBI ENSMUST00000114668.6 ENSMUSP00000110316.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114668.6Link to Ensembl Protein Viewer:ENSMUSP00000110316.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114668Re-query CCDS DB by Protein ID:ENSMUSP00000110316
Original member Current member EBI ENSMUST00000202520.3 ENSMUSP00000143938.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202520.3Link to Ensembl Protein Viewer:ENSMUSP00000143938.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202520Re-query CCDS DB by Protein ID:ENSMUSP00000143938
Original member Current member EBI ENSMUST00000202556.3 ENSMUSP00000143993.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202556.3Link to Ensembl Protein Viewer:ENSMUSP00000143993.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202556Re-query CCDS DB by Protein ID:ENSMUSP00000143993
Original member Current member NCBI NM_001177621.1 NP_001171092.1 Accepted alive Link to Nucleotide Sequence:NM_001177621.1Link to Protein Sequence:NP_001171092.1Re-query CCDS DB by Nucleotide ID:NM_001177621Re-query CCDS DB by Protein ID:NP_001171092Link to BLAST:NP_001171092.1
Original member Current member NCBI NM_001177622.1 NP_001171093.1 Accepted alive Link to Nucleotide Sequence:NM_001177622.1Link to Protein Sequence:NP_001171093.1Re-query CCDS DB by Nucleotide ID:NM_001177622Re-query CCDS DB by Protein ID:NP_001171093Link to BLAST:NP_001171093.1
Original member Current member NCBI NM_001360022.1 NP_001346951.1 Accepted alive Link to Nucleotide Sequence:NM_001360022.1Link to Protein Sequence:NP_001346951.1Re-query CCDS DB by Nucleotide ID:NM_001360022Re-query CCDS DB by Protein ID:NP_001346951Link to BLAST:NP_001346951.1
Original member Current member NCBI NM_177870.5 NP_808538.1 Accepted alive Link to Nucleotide Sequence:NM_177870.5Link to Protein Sequence:NP_808538.1Re-query CCDS DB by Nucleotide ID:NM_177870Re-query CCDS DB by Protein ID:NP_808538Link to BLAST:NP_808538.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171092.1 634 Q5U4D8 634 100% 0 0
NP_001171093.1 634 Q5U4D8 634 100% 0 0
NP_001346951.1 634 Q5U4D8 634 100% 0 0
NP_808538.1 634 Q5U4D8 634 100% 0 0

Chromosomal Locations for CCDS 19169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31036807 31036953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31037103 31037218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31037409 31037512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31037714 31037892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31038014 31038100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31038942 31039009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31039304 31039416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31039754 31039842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31040362 31040491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31040658 31040798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31041144 31041298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31041544 31041611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31042138 31042189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31042579 31042644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31042950 31043339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGAGTGTGGCGAGCACTGCAGCTCCCTTCCATACAACCTCAGGCTCCAGCGGGGCTATTTCTACCTTTT
CTGTTGTGGACTATGTGGTATTTGGCCTGTTGCTGGTCCTCTCCCTTGTCATTGGGCTCTATCATGCTTG
TCGTGGCTGGGGCCACCATACCGTTGGTGAACTGCTGATGGCAGACCGCAAAATGGGCTGTCTTCCTGTG
GCACTGTCCTTGCTGGCCACCTTCCAGTCAGCCGTGGCCATCCTGGGAGCACCAGCTGAGATCTTCCGAT
TTGGAACCCAGTATTGGTTCCTGGGGTGCTCCTACTTCCTGGGGCTCCTGATCCCTGCTCACATCTTCAT
CCCTGTCTTCTACCGTCTGCATCTGACCAGCGCCTATGAGTACCTAGAGCTCCGCTTCAATAAAGCAGTT
CGGATCTGTGGGACTGTGACCTTCATCTTTCAGATGGTGATATACATGGGAGTTGCTCTCTATGCACCAT
CCTTGGCCCTCAATGCAGTGACTGGATTTGATTTATGGCTGTCAGTGCTGGCCCTAGGAATTGTCTGCAA
CATCTACACTGCACTGGGTGGGCTGAAGGCTGTCATCTGGACAGATGTGTTCCAAACACTGGTCATGTTC
CTCGGGCAGCTGGTAGTGATCATTGTAGGAGCAGCCAGAGTGGGTGGCTTGGGCCATGTATGGAATGTGA
CTTCCCAGCATGGCCTCATCTCTGGGATTAACCTGGATCCTGACCCCTTTGTGCGTCATACTTTCTGGAC
TTTGGCCTTTGGAGGTGTCTTCATGATGCTCTCCTTGTATGGAGTGAATCAGGCTCAGGTGCAGCGCTAC
CTCAGTTCCCACTCGGAGAGAGCTGCTGTGCTCTCCTGCTATGCAGTGTTCCCTTGCCAGCAAGTGGCCC
TCTGCATGAGCTGCCTCATTGGTCTGGTCATGTTTGCCTATTATAACATGTATAGCATGAGCCCCGAGCT
GAAGCAAGCAGCCCCTGACCAGTTAGTCCTCTATTTTGTGATGGACCTCCTGAAAGACATGCCAGGGCTG
CCTGGGCTCTTCGTTGCCTGTCTCTTCAGTGGATCTCTCAGCACCATATCCTCTGCATTCAATTCACTGG
CAACTGTCACGATGGAAGACCTGATCCAGCCCTGGTTCCCACAGTTGACTGAAACTCGGGCCATCATGCT
TTCTCGAGGCCTTGCCTTTGCCTATGGGCTAGTTTGCCTGGGAATGGCCTATATTTCCTCTCATCTGGGA
TCAGTGCTCCAGGCAGCACTCAGTATCTTTGGCATGGTTGGAGGGCCACTGCTGGGACTCTTCTGCCTTG
GACTGTTCTTCCCATGCGCCAACCCTCTTGGTGCCATTGTAGGCCTGTTGACGGGACTCACCATGGCCTT
CTGGATCGGCATTGGGAGCATAGTAAGCAGGATGAGTTCTGCTGTGGCACCCCCTCCCCTTAATGGATCC
AGCTCCTTCCTGCCTGCCAATGTAACTGTCGCCGCTGTGACCACCGTGATGCCTTCTACCCTGTCCAAGC
CCACAGGACTGCAGCACTTCTATTCCCTGTCCTATTTATGGTACAGCGCGCACAACTCCACCACAGTCAT
TGTAGTGGGCCTGATTGTCAGTCTGCTCACTGGGGGAATGCGGGGCCGGTCCCTGAACCCCGGCACCATT
TACCCTGTGCTGCCAAAGCTCCTAGCACTCCTGCCCCTATCCTGCCAGAAGCGGCTTTGCTGGAGAAGCC
ACAGCCAGGATATCCCTGTGATCCCCAACCTGTTTCCAGAGAAGATGAGGAATGGGGTGCTGCAGGACAG
CACAGACAAAGAGAGGATGGCTGAAGATGGCCTCGTCCACCAGCCGTGCAGCCCTACCTACGTTGTCCAG
GAGACCTCCCTGTGA

Translation (634 aa):
MSVASTAAPFHTTSGSSGAISTFSVVDYVVFGLLLVLSLVIGLYHACRGWGHHTVGELLMADRKMGCLPV
ALSLLATFQSAVAILGAPAEIFRFGTQYWFLGCSYFLGLLIPAHIFIPVFYRLHLTSAYEYLELRFNKAV
RICGTVTFIFQMVIYMGVALYAPSLALNAVTGFDLWLSVLALGIVCNIYTALGGLKAVIWTDVFQTLVMF
LGQLVVIIVGAARVGGLGHVWNVTSQHGLISGINLDPDPFVRHTFWTLAFGGVFMMLSLYGVNQAQVQRY
LSSHSERAAVLSCYAVFPCQQVALCMSCLIGLVMFAYYNMYSMSPELKQAAPDQLVLYFVMDLLKDMPGL
PGLFVACLFSGSLSTISSAFNSLATVTMEDLIQPWFPQLTETRAIMLSRGLAFAYGLVCLGMAYISSHLG
SVLQAALSIFGMVGGPLLGLFCLGLFFPCANPLGAIVGLLTGLTMAFWIGIGSIVSRMSSAVAPPPLNGS
SSFLPANVTVAAVTTVMPSTLSKPTGLQHFYSLSYLWYSAHNSTTVIVVGLIVSLLTGGMRGRSLNPGTI
YPVLPKLLALLPLSCQKRLCWRSHSQDIPVIPNLFPEKMRNGVLQDSTDKERMAEDGLVHQPCSPTYVVQ
ETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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