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Report for CCDS19199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19199.1 Public Mus musculus 5 Slc5a1 23 108 98 CCDS HistoryNCBI Gene:20537Re-query CCDS DB by CCDS ID:19199.1Re-query CCDS DB by GeneID:20537See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19199.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011178.4 ENSMUSP00000011178.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011178.4Link to Ensembl Protein Viewer:ENSMUSP00000011178.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000011178Re-query CCDS DB by Protein ID:ENSMUSP00000011178
Original member Current member NCBI NM_019810.4 NP_062784.3 Accepted alive Link to Nucleotide Sequence:NM_019810.4Link to Protein Sequence:NP_062784.3Re-query CCDS DB by Nucleotide ID:NM_019810Re-query CCDS DB by Protein ID:NP_062784Link to BLAST:NP_062784.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062784.3 665 Q8C3K6 665 99.6992% 0 2

Chromosomal Locations for CCDS 19199.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33104457 33104591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33116783 33116854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33131950 33132054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33133386 33133445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33134603 33134707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33143963 33144068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33145250 33145330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33146507 33146727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33146943 33147078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33148897 33149004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33152559 33152709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33154546 33154714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33158088 33158303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33159077 33159185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33160779 33161002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGGACAGTAGCACCTTGAGCCCCGCGGTTACTGCCACCGATGCACCCATCCCGTCCTACGAGCGCATTC
GC
AATGCGGCTGACATCTCAGTCATCGTCATCTACTTCGTGGTGGTGATGGCTGTCGGGCTGTGGGCCAT
G
TTTTCCACTAATCGTGGTACCGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGTGTGGTGGCCGATT
GGA
GCCTCTCTCTTTGCCAGTAACATTGGAAGTGGTCACTTTGTGGGGCTGGCAGGCACAGGAGCAGCCG
CA
GGCATTGCCATGGGTGGCTTTGAATGGAACGCCTTGGTTTTGGTGGTTGTGCTGGGCTGGATATTTGT
C
CCGATTTACATCAAGGCCGGGGTGGTGACGATGCCGGAGTATCTGCGGAAGCGGTTTGGAGGCAAGAGA
ATT
CAGATCTACCTTTCCGTTCTGTCCCTGCTCCTCTACATCTTCACAAAGATCTCTGCAGACATCTTCT
CC
GGGGCTATATTCATCAATCTAGCCTTGGGCCTGGATATATACTTGGCCATTTTCATCCTGCTAGCAAT
C
ACTGCCCTTTATACAATCACAGGGGGGCTGGCAGCTGTAATTTACACAGATACCCTGCAGACCGCGATC
ATG
CTGGTGGGGTCTTTTATCCTGACTGGGTTTGCTTTCAATGAAGTAGGAGGATATGAAGCCTTCATGG
AC
AAGTACATGAAAGCTATTCCAACTAAGGTTTCTAACGGAAATTTTACCGCCAAGGAAGAATGCTACAC
A
CCGAGGGCTGACTCATTCCACATATTCAGAGACCCCATTACTGGAGACATGCCGTGGCCTGGGCTCATT
TTT
GGCCTGGCCATCCTCGCCCTGTGGTACTGGTGTACGGATCAGGTCATTGTGCAGCGATGCCTCTCGG
CC
AAGAACATGTCTCACGTGAAGGCTGGCTGTACCCTGTGTGGCTATCTGAAGCTACTGCCCATGTTCCT
C
ATGGTGATGCCAGGAATGATCAGCCGGATTCTATATACAGAAAAAATCGCCTGTGTCCTCCCTGAAGAA
TGT
CAGAAATACTGCGGCACACCAGTGGGCTGTACCAACATCGCCTACCCCACGCTCGTGGTGGAACTCA
TG
CCTAATGGACTGCGAGGCCTGATGCTGTCTGTCATGATGGCTTCCCTCATGAGCTCCTTGACCTCCAT
C
TTCAACAGCGCCAGTACTCTCTTCACCATGGACATCTACACCAAGATCCGGAAGAAGGCATCTGAGAAG
GAG
CTCATGATTGCAGGAAGGTTGTTCATCCTCGTGCTGATTGGCATCAGCATTGCCTGGGTACCCATTG
TA
CAGTCTGCTCAAAGTGGGCAGCTCTTTGATTACATCCAGTCTATCACCAGTTACCTGGGGCCGCCCAT
T
GCAGCTGTCTTCCTGCTTGCCATTTTCTGCAAGAGAGTCAATGAACAAGGAGCCTTCTGGGGACTGATC
CTG
GGCTTCCTGATTGGAATCTCCCGTATGATCACTGAGTTTGCCTATGGAACTGGGAGCTGCATGGAGC
CC
AGCAACTGCCCCAAGATCATCTGTGGGGTCCACTATTTGTACTTTGCCATCATCCTCTTCGTCATCAG
C
GTCATCACCATCTTGATCATCTCCTTCCTCACCAAGCCCATTCCAGACGTGCACCTGTACCGTTTGTGT
TGG
AGTCTACGCAACAGCAAGGAAGAGCGAATCGACCTGGATGCAGGAGAGGAGGAGGACATCCCAGAGG
AC
TCCAAGGACACAATTGAAATAGACACAGAAGCCCCCCAGAAGAAGAAAGGATGCTTCAGGAGAGCATA
T
GACCTGTTCTGTGGGCTGGACCAGGATAAAGGACCAAAGATGACTAAGGAGGAGGAGGAAGCCATGAAG
ATG
AAGATGACAGACACTTCTGAGAAGCCTTTGTGGAGGACAGTGGTGAACATCAACGGTATTATCCTGC
TG
GCGGTAGCTGTCTTCTGCCATGCCTATTTTGCCTGA


Translation (665 aa):
MDSSTLSPAVTATDAPIPSYERIRNAADISVIVIYFVVVMAVGLWAMFSTNRGTVGGFFLAGRSMVWWPI
G
ASLFASNIGSGHFVGLAGTGAAAGIAMGGFEWN
ALVLVVVLGWIFVPIYIKAGVVTMPEYLRKRFGGKR
I
QIYLSVLSLLLYIFTKIS
ADIFSGAIFINLALGLDIYLAIFILLAITALYTITGGLAAVIYTDTLQTAI
M
LVGSFILTGF
AFNEVGGYEAFMDKYMKAIPTKVSNGNFTAKEECYTPRADSFHIFRDPITGDMPWPGLI
F
GLAILALWYWCTDQ
VIVQRCLSAKNMSHVKAGCTLCGYLKLLPMFLMVMPGMISRILYTEKIACVLPEE
C
QKYCGTPVGCTNIAYPTLVVELMPN
GLRGLMLSVMMASLMSSLTSIFNSASTLFTMDIYTKIRKKASEK
E
LMIAG
RLFILVLIGISIAWVPIVQSAQSGQLFDYIQSITSYLGPPIAAVFLLAIFCKRVNEQGAFWGLI
L
GFLIGISRMITEFAYGTGSCMEPSNCPKIICGVHYLYFAIILFVISVITILIISFLTKPIPDVH
LYRLC
W
SLRNSKEERIDLDAGEEEDIPEDSKDTIEI
DTEAPQKKKGCFRRAYDLFCGLDQDKGPKMTKEEEEAMK
M
KMTDTSEKPLWRTVVNINGIILLAVAVFCHAYFA




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser