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Report for CCDS19232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19232.1 Public Mus musculus 5 Acox3 23 108 98 CCDS HistoryNCBI Gene:80911Re-query CCDS DB by CCDS ID:19232.1Re-query CCDS DB by GeneID:80911See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068947.13 ENSMUSP00000063412.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068947.13Link to Ensembl Protein Viewer:ENSMUSP00000063412.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068947Re-query CCDS DB by Protein ID:ENSMUSP00000063412
Original member Current member EBI ENSMUST00000114237.7 ENSMUSP00000109875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114237.7Link to Ensembl Protein Viewer:ENSMUSP00000109875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114237Re-query CCDS DB by Protein ID:ENSMUSP00000109875
Original member NCBI NM_001357018.1 NP_001343947.1 Updated not alive Link to Nucleotide Sequence:NM_001357018.1Link to Protein Sequence:NP_001343947.1Re-query CCDS DB by Nucleotide ID:NM_001357018Re-query CCDS DB by Protein ID:NP_001343947
Current member NCBI NM_001357018.2 NP_001343947.1 Accepted alive Link to Nucleotide Sequence:NM_001357018.2Link to Protein Sequence:NP_001343947.1Re-query CCDS DB by Nucleotide ID:NM_001357018Re-query CCDS DB by Protein ID:NP_001343947Link to BLAST:NP_001343947.1
Original member NCBI NM_001357019.1 NP_001343948.1 Updated not alive Link to Nucleotide Sequence:NM_001357019.1Link to Protein Sequence:NP_001343948.1Re-query CCDS DB by Nucleotide ID:NM_001357019Re-query CCDS DB by Protein ID:NP_001343948
Current member NCBI NM_001357019.2 NP_001343948.1 Accepted alive Link to Nucleotide Sequence:NM_001357019.2Link to Protein Sequence:NP_001343948.1Re-query CCDS DB by Nucleotide ID:NM_001357019Re-query CCDS DB by Protein ID:NP_001343948Link to BLAST:NP_001343948.1
Original member NCBI NM_030721.3 NP_109646.2 Updated not alive Link to Nucleotide Sequence:NM_030721.3Link to Protein Sequence:NP_109646.2Re-query CCDS DB by Nucleotide ID:NM_030721Re-query CCDS DB by Protein ID:NP_109646
Current member NCBI NM_030721.4 NP_109646.2 Accepted alive Link to Nucleotide Sequence:NM_030721.4Link to Protein Sequence:NP_109646.2Re-query CCDS DB by Nucleotide ID:NM_030721Re-query CCDS DB by Protein ID:NP_109646Link to BLAST:NP_109646.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343947.1 700 Q9EPL9 700 100% 0 0
NP_001343948.1 700 Q9EPL9 700 100% 0 0
NP_109646.2 700 Q9EPL9 700 100% 0 0

Chromosomal Locations for CCDS 19232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35588170 35588313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35588619 35588852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35589176 35589250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35589694 35589783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35592076 35592219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35594310 35594398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35598315 35598411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35599692 35599874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35601503 35601625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35602921 35603041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35604614 35604736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35605207 35605320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35607082 35607197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35608258 35608432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35609020 35609087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35609736 35609822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35612015 35612134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGGGATCCCTACCGGAAGAAAAAGACAGTGCTTTGTGGTCAGACACCCCCAAGGGCCCTCTTAGTGCCT
ACCGAGCAAGAGCCTCCTTCAACTCTGGGGAGCTGCTGCTCTTTTGGGACGGCCAGGATGTAATCCACTT
CAAGAAAACCATCTTCTCAACTTTGGAGAATGACCCTCTCTTTGCCCGCTCGTACGGGGCCGACCTGCCC
CTAGAGAAGCTACGAGAACTGAACTTCCTTCGCTGCAAGAGGGTCTTTGAGTATGGCTTCTTCAAAGTAG
AGGAACTGCTAAAGAACCCCCTGAAGATTCTAGTGCTGATTAACTGCCTGGGCATGTACGACTGGTCCCT
GGCCAACAAATGCGTCCTCCACATGTTGGTTTTTGGAACCACAGTTTTCGTTTCTGGTTCTGAGAAGCAT
TTCAAGTACCTTGAGAAGATCTATAGCCTGGAGATTTTTGGCTGTTTTGCTCTCACCGAACTGAGTCATG
GGAGTAATACCAAGGCCATGCGAACGACAGCTCACTATGATCCTGATACTCAGGAATTCATCTTACATTC
CCCGGATTTCGAGGCTGCCAAATTTTGGGTGGGCAACCTGGGCAAGACGGCAACTCATGCGGTGGTGTTT
GCCCAACTGTACATGCCAGACGGCCAGTGCCACGGGCTGCATTCCTTCCTGGTGCAGATCCGTGACACGA
AGACCCTGCTTCCCATGACGGGGGTGATGGTCGGTGACATTGGGAAGAAGCTGGGGCAGAATGGCCTGGA
TAATGGATTCGCCATGTTCAACAAAGTTCGAATTCCTCGCCAGAACCTGCTGGACAGGACTGGGAATATC
ACCTCTGAGGGCACTTACAACAGCCCCTTTAAGGATGTCCGGCAGCGTTTGGGCGCATCATTGGGCAGCC
TGTCCTCAGGACGCATCTCCATCATCAGCATGTCTGTGGTCAACCTGAAGCTGGCCGTGTCCATAGCCAT
CCGGTTCTCGGCCACACGGTGTCAGTTTGGACCCACGGATAAGGAAGAGATTCCTGTCCTTGAATATCCA
CTGCAGCAATGGCGCATACTTCCGTACCTGGCGGCTGCCTATGCCTTGGACCACTTCTCTAAGACAATCT
TCATGGACTTGATAGAGGTGCAGAGTGCCCGGCTCAGGGGAGACCACAGCGACCAGCAGGCAGAACTCGG
ACGTGAGATCCATGCTCTGGCATCGGCTGGCAAGCCTCTAGCCTCATGGACAGCCCAGCGGGGTATCCAG
GAGTGCCGTGAGGCGTGTGGGGGACATGGCTACCTGGCCATGAACCGGTTTGGTGACCTCAGAAACGACA
ACGACCCAAACTGTACCTATGAAGGTGACAACAATGTCCTGCTGCAGCAGACCAGCAACTACCTGCTCAG
CCTCCTGGAGCCTCCTCTCCAAGACGGAGCTCACTTCACAAGCCCTCTCAAGACCGTGGACTTTCTGGAA
GCCTATCCTGGAATCTTGGGCCAGAAGTTCCTGGGCTCCAGCAAGGCTGACTGGATGGACTCAGCAGCCC
CCCTGGCAGCCTACCGCTGGCTTGTTTGCTACTTGCTCCAAGAGAGCCATCGGAGATACTGCCAAGAGAA
AAAGTCCAGAGGCAGTGACTTTGAAGCAAGAAACAACAGCCAGGTGTACGGCTGCCGGCCCCTGGCCCTG
GCCTTCATGGAACTCACCGTGATGCAGCGATTCCACGAACATATACACAGCTCCGGTCTGTCTCCATCTC
TGCGGACTGTGCTCGGGCGGCTCAGCACGCTCTACGGCCTGTGGTGCCTGAGCCAGCACATGGCCCTGCT
CTACCGAGGTGGCTACATTTCTGGGGAACAAACAGGAAGAGCGATGGAGGACGCCATCCTGACCCTGTGT
GAGCAGCTGAAAGACGATGCGGTGGCCTTGGTAGATGTCATCGCCCCCTCCGACTTTGTTCTGAACTCCC
CAATTGCCAAAGCTGATGGTGAGCTCTATAAAAACCTGTGGGCAGCTGTCCTGCAGCAGAATGGTGTGCT
AGAGCGTGCCGCCTGGTGGCCCGAGTTCTCTGCCAACAAATCTGTAGCCGACAGGCTAAAGTCCCAGCTG
TAG

Translation (700 aa):
MGSLPEEKDSALWSDTPKGPLSAYRARASFNSGELLLFWDGQDVIHFKKTIFSTLENDPLFARSYGADLP
LEKLRELNFLRCKRVFEYGFFKVEELLKNPLKILVLINCLGMYDWSLANKCVLHMLVFGTTVFVSGSEKH
FKYLEKIYSLEIFGCFALTELSHGSNTKAMRTTAHYDPDTQEFILHSPDFEAAKFWVGNLGKTATHAVVF
AQLYMPDGQCHGLHSFLVQIRDTKTLLPMTGVMVGDIGKKLGQNGLDNGFAMFNKVRIPRQNLLDRTGNI
TSEGTYNSPFKDVRQRLGASLGSLSSGRISIISMSVVNLKLAVSIAIRFSATRCQFGPTDKEEIPVLEYP
LQQWRILPYLAAAYALDHFSKTIFMDLIEVQSARLRGDHSDQQAELGREIHALASAGKPLASWTAQRGIQ
ECREACGGHGYLAMNRFGDLRNDNDPNCTYEGDNNVLLQQTSNYLLSLLEPPLQDGAHFTSPLKTVDFLE
AYPGILGQKFLGSSKADWMDSAAPLAAYRWLVCYLLQESHRRYCQEKKSRGSDFEARNNSQVYGCRPLAL
AFMELTVMQRFHEHIHSSGLSPSLRTVLGRLSTLYGLWCLSQHMALLYRGGYISGEQTGRAMEDAILTLC
EQLKDDAVALVDVIAPSDFVLNSPIAKADGELYKNLWAAVLQQNGVLERAAWWPEFSANKSVADRLKSQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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