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Report for CCDS19257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19257.1 Public Mus musculus 5 Hs3st1 23 108 98 CCDS HistoryNCBI Gene:15476Re-query CCDS DB by CCDS ID:19257.1Re-query CCDS DB by GeneID:15476See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053116.6 ENSMUSP00000051055.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053116.6Link to Ensembl Protein Viewer:ENSMUSP00000051055.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053116Re-query CCDS DB by Protein ID:ENSMUSP00000051055
Original member Current member EBI ENSMUST00000117944.1 ENSMUSP00000113919.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117944.1Link to Ensembl Protein Viewer:ENSMUSP00000113919.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117944Re-query CCDS DB by Protein ID:ENSMUSP00000113919
Original member Current member NCBI NM_010474.2 NP_034604.1 Accepted alive Link to Nucleotide Sequence:NM_010474.2Link to Protein Sequence:NP_034604.1Re-query CCDS DB by Nucleotide ID:NM_010474Re-query CCDS DB by Protein ID:NP_034604Link to BLAST:NP_034604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034604.1 311 O35310 311 100% 0 0

Chromosomal Locations for CCDS 19257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 39614363 39615298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGACCTTGCTGCTCCTGGGTGCGGTGCTGCTGGTGGCCCAGCCCCAGCTTGTGCATTCCCACCCGGCTG
CTCCTGGCCCGGGGCTCAAACAGCAGGAGCTTCTGAGGAAGGTGATTATTCTCCCAGAGGACACCGGAGA
AGGCACAGCATCCAATGGTTCCACACAGCAGCTGCCACAGACCATCATCATTGGGGTGCGCAAGGGTGGT
ACCCGAGCCCTGCTAGAGATGCTCAGCCTGCATCCTGATGTTGCTGCAGCTGAAAACGAGGTCCATTTCT
TTGACTGGGAGGAGCATTACAGCCAAGGCCTGGGCTGGTACCTCACCCAGATGCCCTTCTCCTCCCCTCA
CCAGCTCACCGTGGAGAAGACACCCGCCTATTTCACTTCGCCCAAAGTGCCTGAGAGAATCCACAGCATG
AACCCCACCATCCGCCTGCTGCTTATCCTGAGGGACCCATCAGAGCGCGTGCTGTCCGACTACACCCAGG
TGTTGTACAACCACCTTCAGAAGCACAAGCCCTATCCACCCATTGAGGACCTCCTAATGCGGGACGGTCG
GCTGAACCTGGACTACAAGGCTCTCAACCGCAGCCTGTACCATGCACACATGCTGAACTGGCTGCGTTTT
TTCCCGTTGGGCCACATCCACATTGTGGATGGCGACCGCCTCATCAGAGACCCTTTCCCTGAGATCCAGA
AGGTCGAAAGATTCCTGAAGCTTTCTCCACAGATCAACGCCTCGAACTTCTACTTTAACAAAACCAAGGG
CTTCTACTGCCTGCGGGACAGTGGCAAGGACCGCTGCTTACACGAGTCCAAAGGCCGGGCGCACCCCCAG
GTGGATCCCAAACTACTTGATAAACTGCACGAATACTTTCATGAGCCAAATAAGAAATTTTTCAAGCTCG
TGGGCAGAACATTCGACTGGCACTGA

Translation (311 aa):
MTLLLLGAVLLVAQPQLVHSHPAAPGPGLKQQELLRKVIILPEDTGEGTASNGSTQQLPQTIIIGVRKGG
TRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSPKVPERIHSM
NPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGRLNLDYKALNRSLYHAHMLNWLRF
FPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGKDRCLHESKGRAHPQ
VDPKLLDKLHEYFHEPNKKFFKLVGRTFDWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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