NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19265.1 Public Mus musculus 5 Cd38 23 108 98 CCDS HistoryNCBI Gene:12494Re-query CCDS DB by CCDS ID:19265.1Re-query CCDS DB by GeneID:12494See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19265.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030964.5 ENSMUSP00000030964.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030964.5Link to Ensembl Protein Viewer:ENSMUSP00000030964.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030964Re-query CCDS DB by Protein ID:ENSMUSP00000030964
Original member NCBI NM_007646.5 NP_031672.2 Updated not alive Link to Nucleotide Sequence:NM_007646.5Link to Protein Sequence:NP_031672.2Re-query CCDS DB by Nucleotide ID:NM_007646Re-query CCDS DB by Protein ID:NP_031672
Current member NCBI NM_007646.6 NP_031672.2 Accepted alive Link to Nucleotide Sequence:NM_007646.6Link to Protein Sequence:NP_031672.2Re-query CCDS DB by Nucleotide ID:NM_007646Re-query CCDS DB by Protein ID:NP_031672Link to BLAST:NP_031672.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031672.2 304 P56528 304 100% 0 0

Chromosomal Locations for CCDS 19265.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43868876 43869120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43900333 43900462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43901421 43901556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43903595 43903680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43906164 43906237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43907513 43907605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43907923 43908009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43910280 43910343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGGCTAACTATGAATTTAGCCAGGTGTCTGGGGACAGACCTGGCTGCCGCCTCTCTAGGAAAGCCCAGA
TCGGTCTCGGAGTGGGTCTCCTGGTCCTGATCGCCTTGGTAGTAGGGATCGTGGTCATACTTCTGAGGCC
GCGCTCACTCCTGGTGTGGACTGGAGAGCCTACCACGAAGCACTTTTCTGACATCTTCCTGGGACGCTGC
CTCATCTACACTCAGATCCTCCGGCCGGAGATGAGAGATCAGAACTGCCAGGAGATACTGAGTACATTCA
AAGGAGCATTTGTTTCCAAGAACCCTTGCAACATCACAAGAGAAGACTACGCCCCACTTGTTAAATTGGT
CACTCAAACCATACCATGTAACAAGACTCTCTTTTGGAGCAAATCCAAACACCTGGCCCATCAATATACT
TGGATCCAGGGAAAGATGTTCACCCTGGAGGACACCCTGCTGGGCTACATTGCTGATGATCTCAGGTGGT
GTGGAGACCCTAGTACTTCTGATATGAACTATGTCTCTTGCCCACATTGGAGTGAAAACTGTCCCAACAA
CCCTATTACTGTGTTCTGGAAAGTGATTTCCCAAAAGTTTGCAGAAGATGCCTGTGGTGTGGTCCAAGTG
ATGCTCAATGGGTCCCTCCGTGAGCCATTTTACAAAAACAGCACCTTTGGAAGTGTGGAAGTCTTTAGTT
TGGACCCAAATAAGGTTCATAAACTACAGGCCTGGGTGATGCACGACATCGAAGGAGCTTCCAGTAACGC
ATGTTCAAGCTCCTCCTTAAATGAGCTGAAGATGATTGTGCAGAAAAGGAATATGATATTTGCCTGCGTG
GATAACTACAGGCCTGCCAGGTTTCTTCAGTGTGTGAAGAACCCTGAGCACCCATCGTGTAGACTTAATA
CGTGA

Translation (304 aa):
MANYEFSQVSGDRPGCRLSRKAQIGLGVGLLVLIALVVGIVVILLRPRSLLVWTGEPTTKHFSDIFLGRC
LIYTQILRPEMRDQNCQEILSTFKGAFVSKNPCNITREDYAPLVKLVTQTIPCNKTLFWSKSKHLAHQYT
WIQGKMFTLEDTLLGYIADDLRWCGDPSTSDMNYVSCPHWSENCPNNPITVFWKVISQKFAEDACGVVQV
MLNGSLREPFYKNSTFGSVEVFSLDPNKVHKLQAWVMHDIEGASSNACSSSSLNELKMIVQKRNMIFACV
DNYRPARFLQCVKNPEHPSCRLNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH