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Report for CCDS1936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1936.1 Public Homo sapiens 2 SLC4A5 24 110 108 CCDS HistoryNCBI Gene:57835Re-query CCDS DB by CCDS ID:1936.1Re-query CCDS DB by GeneID:57835See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1936.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346834.8 ENSP00000251768.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346834.8Link to Ensembl Protein Viewer:ENSP00000251768.7Re-query CCDS DB by Nucleotide ID:ENST00000346834Re-query CCDS DB by Protein ID:ENSP00000251768
Original member Current member EBI ENST00000377634.8 ENSP00000366861.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377634.8Link to Ensembl Protein Viewer:ENSP00000366861.4Re-query CCDS DB by Nucleotide ID:ENST00000377634Re-query CCDS DB by Protein ID:ENSP00000366861
Original member Current member NCBI NM_021196.3 NP_067019.3 Accepted alive Link to Nucleotide Sequence:NM_021196.3Link to Protein Sequence:NP_067019.3Re-query CCDS DB by Nucleotide ID:NM_021196Re-query CCDS DB by Protein ID:NP_067019Link to BLAST:NP_067019.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067019.3 1137 Q9BY07-1 1137 100% 0 0

Chromosomal Locations for CCDS 1936.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74221467 74221501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74222868 74222952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74224840 74224995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74226957 74227130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74227517 74227564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74227810 74227878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74231236 74231308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74232469 74232647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74233402 74233563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74235101 74235214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74239335 74239535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74241994 74242052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74247036 74247307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74248353 74248486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74250343 74250517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74252179 74252388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74252974 74253128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74254619 74254706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74255775 74255932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74259588 74259643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74262137 74262232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74264147 74264299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74265104 74265264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74285773 74285902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74304489 74304680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74314945 74315023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3414 nt):
ATGAAGGTGAAGGAGGAGAAGGCTGGGGTAGGAAAGCTGGACCACACTAACCACAGGAGGAGATTTCCGG
ATCAGAAAGAATGCCCTCCTATCCACATTGGGCTTCCAGTACCCACTTACCCTCAAAGAAAAACTGACCA
GAAGGGACATCTTTCAGGCCTGCAAAAAGTCCACTGGGGCCTGCGGCCAGACCAGCCACAGCAGGAACTG
ACTGGCCCAGGGAGTGGGGCAAGCAGCCAGGACAGCAGCATGGATCTTATCAGCAGGACTCGGTCCCCAG
CTGCTGAGCAGCTCCAGGACATCCTGGGGGAGGAAGATGAGGCTCCCAACCCCACCCTCTTTACAGAGAT
GGATACTCTGCAGCATGACGGAGACCAGATGGAGTGGAAGGAGTCAGCCAGGTGGATAAAGTTTGAAGAA
AAGGTAGAGGAAGGCGGCGAACGCTGGAGCAAGCCCCACGTGTCCACACTATCCCTGCACAGCCTCTTCG
AGCTCCGTACCTGCCTGCAGACGGGGACGGTGCTGCTGGATTTGGACAGTGGCTCCTTACCACAGATCAT
AGATGATGTCATTGAGAAGCAGATTGAGGATGGTCTCCTGCGGCCAGAGCTCCGGGAGAGGGTCAGTTAC
GTCCTCCTGAGGAGGCACCGCCACCAAACCAAGAAGCCCATCCACCGCTCCTTAGCTGACATTGGGAAGT
CAGTCTCCACCACAAATCGCAGTCCTGCCCGGAGCCCTGGTGCTGGCCCGAGTCTACACCACTCCACGGA
AGACCTGCGGATGCGGCAGAGTGCAAATTACGGACGTCTGTGTCATGCCCAGAGCAGAAGCATGAATGAC
ATTTCTCTCACCCCAAACACAGACCAGCGGAAAAACAAATTCATGAAGAAGATCCCCAAGGACTCAGAAG
CGTCCAACGTGCTCGTGGGCGAGGTGGACTTCCTAGACCAGCCATTCATCGCGTTCGTGCGCCTCATCCA
GTCGGCCATGCTGGGAGGAGTGACCGAGGTGCCTGTCCCCACCAGATTTCTGTTTATACTACTGGGACCT
TCTGGGAGAGCAAAATCCTACAATGAAATTGGCCGTGCCATTGCAACCCTCATGGTAGATGATCTCTTCA
GTGACGTGGCCTACAAAGCCCGCAATCGGGAAGATCTGATCGCAGGAATTGATGAATTTCTGGATGAGGT
CATCGTCCTTCCTCCTGGAGAATGGGACCCAAATATCCGGATTGAGCCCCCCAAGAAGGTGCCCTCTGCT
GACAAGAGGAAATCTGTGTTCTCCCTAGCAGAGCTGGGCCAGATGAATGGCTCTGTGGGAGGAGGCGGCG
GAGCTCCTGGAGGAGGCAATGGAGGTGGTGGTGGTGGTGGCAGTGGCGGCGGGGCTGGCAGTGGCGGGGC
CGGCGGAACAAGCAGCGGGGATGATGGAGAGATGCCAGCCATGCATGAAATCGGGGAGGAACTTATCTGG
ACAGGAAGGTTCTTCGGTGGCCTGTGTCTGGATATCAAGAGGAAGTTGCCCTGGTTCCCAAGTGACTTCT
ATGATGGCTTCCACATTCAGTCCATCTCTGCCATCCTATTCATCTACCTCGGCTGTATCACCAACGCGAT
CACCTTTGGTGGGCTTCTGGGGGATGCCACCGACAATTATCAGGGAGTGATGGAGAGCTTCCTGGGCACT
GCCATGGCTGGCTCCTTGTTCTGCCTCTTCTCGGGACAGCCTCTCATCATTCTCAGCAGCACGGGGCCCA
TCCTCATCTTTGAGAAGCTCCTCTTCGACTTCAGCAAAGGCAATGGCCTGGACTACATGGAGTTCCGCCT
CTGGATTGGCCTACACTCAGCTGTCCAGTGCCTTATCCTAGTGGCCACAGATGCCAGCTTTATCATCAAA
TATATCACCCGCTTCACCGAGGAGGGCTTCTCCACCCTTATCAGCTTCATCTTCATCTACGATGCCATCA
AGAAGATGATCGGTGCCTTCAAGTACTACCCTATCAATATGGACTTCAAGCCAAACTTCATCACTACCTA
CAAGTGCGAGTGTGTCGCCCCTGACACAGTGAATACAACCGTGTTCAATGCTTCAGCCCCATTGGCACCA
GACACCAACGCTTCTCTGTACAACCTCCTTAACCTCACAGCGTTGGACTGGTCCCTGCTGAGCAAGAAGG
AGTGTCTGAGCTACGGCGGGCGCCTGCTTGGGAATTCCTGCAAGTTTATCCCAGACCTGGCGCTCATGTC
CTTCATCCTTTTCTTTGGGACATACTCCATGACCCTGACCCTGAAGAAGTTCAAATTCAGCCGCTATTTT
CCTACCAAGGTCCGGGCCCTGGTGGCTGACTTTTCCATTGTTTTCTCCATCCTGATGTTCTGTGGAATCG
ATGCCTGTTTTGGCCTAGAAACTCCCAAGCTGCATGTGCCCAGTGTCATCAAGCCAACGCGGCCTGACCG
AGGCTGGTTCGTGGCCCCCTTTGGGAAGAACCCGTGGTGGGTATACCCAGCAAGCATCCTGCCCGCCCTG
CTGGTGACCATCCTGATCTTCATGGACCAGCAGATCACTGCCGTCATTGTCAACCGGAAGGAGAACAAAC
TGAAGAAGGCTGCCGGCTACCATCTGGACCTGTTCTGGGTGGGCATCCTCATGGCTTTGTGCTCCTTTAT
GGGGCTCCCCTGGTACGTGGCTGCCACGGTCATCTCCATCGCCCACATCGACAGCCTCAAGATGGAGACA
GAGACCAGTGCCCCTGGGGAGCAGCCCCAGTTTCTGGGAGTCAGGGAACAGAGAGTAACCGGCATCATCG
TCTTCATCCTGACGGGAATCTCTGTCTTCCTGGCTCCCATCCTAAAGTGTATCCCCCTGCCGGTGCTGTA
CGGAGTCTTCCTCTACATGGGCGTGGCCTCCCTGAATGGCATCCAGATGGGGACCGGAGGGTCAGAATTC
AAAATCCAGAAGAAGCTGACTCCATTCTGGGAACGCTGCAAGCTCTTCCTGATGCCAGCCAAGCACCAGC
CGGACCATGCCTTCCTGCGGCACGTGCCGCTGCGCCGGATCCACCTCTTCACCCTGGTGCAGATCCTCTG
CCTGGCGGTGCTCTGGATCCTCAAATCCACGGTGGCTGCCATCATCTTCCCGGTCATGATCCTGGGCCTC
ATCATCGTTCGAAGGCTTCTGGATTTCATCTTTTCCCAGCACGACCTGGCCTGGATTGACAACATCCTCC
CAGAGAAGGAAAAAAAGGAGACAGACAAGAAGAGGAAGAGAAAAAAAGGGGCCCACGAGGACTGTGATGA
GGAGCCCCAGTTCCCTCCTCCCTCGGTTATAAAGATTCCCATGGAAAGTGTCCAATCAGATCCCCAAAAC
GGTATCCACTGCATTGCCAGAAAAAGATCTTCCAGTTGGAGTTACTCACTCTGA

Translation (1137 aa):
MKVKEEKAGVGKLDHTNHRRRFPDQKECPPIHIGLPVPTYPQRKTDQKGHLSGLQKVHWGLRPDQPQQEL
TGPGSGASSQDSSMDLISRTRSPAAEQLQDILGEEDEAPNPTLFTEMDTLQHDGDQMEWKESARWIKFEE
KVEEGGERWSKPHVSTLSLHSLFELRTCLQTGTVLLDLDSGSLPQIIDDVIEKQIEDGLLRPELRERVSY
VLLRRHRHQTKKPIHRSLADIGKSVSTTNRSPARSPGAGPSLHHSTEDLRMRQSANYGRLCHAQSRSMND
ISLTPNTDQRKNKFMKKIPKDSEASNVLVGEVDFLDQPFIAFVRLIQSAMLGGVTEVPVPTRFLFILLGP
SGRAKSYNEIGRAIATLMVDDLFSDVAYKARNREDLIAGIDEFLDEVIVLPPGEWDPNIRIEPPKKVPSA
DKRKSVFSLAELGQMNGSVGGGGGAPGGGNGGGGGGGSGGGAGSGGAGGTSSGDDGEMPAMHEIGEELIW
TGRFFGGLCLDIKRKLPWFPSDFYDGFHIQSISAILFIYLGCITNAITFGGLLGDATDNYQGVMESFLGT
AMAGSLFCLFSGQPLIILSSTGPILIFEKLLFDFSKGNGLDYMEFRLWIGLHSAVQCLILVATDASFIIK
YITRFTEEGFSTLISFIFIYDAIKKMIGAFKYYPINMDFKPNFITTYKCECVAPDTVNTTVFNASAPLAP
DTNASLYNLLNLTALDWSLLSKKECLSYGGRLLGNSCKFIPDLALMSFILFFGTYSMTLTLKKFKFSRYF
PTKVRALVADFSIVFSILMFCGIDACFGLETPKLHVPSVIKPTRPDRGWFVAPFGKNPWWVYPASILPAL
LVTILIFMDQQITAVIVNRKENKLKKAAGYHLDLFWVGILMALCSFMGLPWYVAATVISIAHIDSLKMET
ETSAPGEQPQFLGVREQRVTGIIVFILTGISVFLAPILKCIPLPVLYGVFLYMGVASLNGIQMGTGGSEF
KIQKKLTPFWERCKLFLMPAKHQPDHAFLRHVPLRRIHLFTLVQILCLAVLWILKSTVAAIIFPVMILGL
IIVRRLLDFIFSQHDLAWIDNILPEKEKKETDKKRKRKKGAHEDCDEEPQFPPPSVIKIPMESVQSDPQN
GIHCIARKRSSSWSYSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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