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Report for CCDS19388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19388.1 Public Mus musculus 5 Ugt2b38 23 108 98 CCDS HistoryNCBI Gene:100559Re-query CCDS DB by CCDS ID:19388.1Re-query CCDS DB by GeneID:100559See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072818.5 ENSMUSP00000072598.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072818.5Link to Ensembl Protein Viewer:ENSMUSP00000072598.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072818Re-query CCDS DB by Protein ID:ENSMUSP00000072598
Original member Current member NCBI NM_133894.2 NP_598655.1 Accepted alive Link to Nucleotide Sequence:NM_133894.2Link to Protein Sequence:NP_598655.1Re-query CCDS DB by Nucleotide ID:NM_133894Re-query CCDS DB by Protein ID:NP_598655Link to BLAST:NP_598655.1

Chromosomal Locations for CCDS 19388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87410208 87410487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87411719 87411938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87412361 87412448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87420430 87420561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87421594 87421742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87423448 87424171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGCCTGGAAAGTGGATTTCTGCTCTGCTGCTGCTGCAGATAAGTTGCTGCTTCAGATCTGTGAAATGTG
GGAAAGTGTTGGTGTGGCCGATGGAATTCAGTCATTGGATGAACATAAAAATAATACTGGATGAACTGGT
ACAGAGAGGCCATGAAGTCACTGTTCTGAGACCTTCAGCTTACTATGTTCTTGATCCCAAAAAATCACCT
GGCCTTAAGTTTGAAACTTTTCCTACATCTGTCAGTAAAGACAATCTGGAAAATTTTTTCATTAAGTTTG
TGGATGTGTGGACTTATGAAATGCCAAGGGATACATGTTTGTCATATTCTCCTTTACTGCAAAATATGAT
TGATGAATTTTCTGATTATTTTCTAAGTCTTTGTAAAGATGTTGTTTCAAACAAAGAGCTCATGACAAAG
CTACAGGAATCCAAGTTTGATGTGCTTTTGTCAGATCCTGTTGCTTCCTGTGGGGAGCTCATAGCTGAAC
TGCTCCAGATTCCTTTTCTGTACAGTATCCGCTTCTCTCCAGGCTACCAAATTGAAAAGTCCAGCGGGAG
ATTTCTACTCCCTCCCTCTTATGTACCTGTAATTCTGTCAGGATTAGGTGGACAAATGACATTCATAGAG
AGAGTAAAAAATATGATATGCAGGCTTTATTTTGACTTTTGGTTCCAGATGTTTAATGATAAGAAATGGG
ACTCATTTTACAGTGAATATTTGGGAAGGCCCACCACCTTAGCTGAGACAATGGGCAAGGCAGAAATGTG
GCTCATTAGATCCAACTGGGATTTGGAGTTTCCTCACCCAACCTTACCAAATGTTGACTATGTTGGAGGA
CTCCACTGCAAACCTGCTAAACCTTTGCCTAAGGATATGGAAGAATTTGTCCAGAGCTCTGGAGACCATG
GTGTGGTGGTGTTTTCACTTGGGTCAATGGTTAGTAACATGACAGAAGAAAAAGCCAACACAATTGCATG
GGCCCTTGCCCAGATTCCACAAAAGGTTCTTTGGAAATTTGATGGCAAAACCCCAGCAACTTTAGGACAC
AATACGAGAGTGTACAAGTGGCTCCCCCAGAATGACCTCCTTGGTCATCCAAAAACAAAAGCCTTTGTAA
CTCATGGTGGGGCCAATGGTGTCTATGAGGTGATCTATCATGGAATCCCTATGATTGGCATTCCTTTGTT
TGGAGAACAACATGATAATATTGCCCATATGGTGGCCAAAGGAGCAGCTGTTACATTGAATATCAGAACA
ATGTCAAGATCAGATGTACTCAATGCACTGGAGGAAGTCATAGACAATCCTTTCTATAAAAAGAATGCTA
TATGGTTGTCAACCATTCACCACGACCAGCCTACGAAGCCCCTGGACAGGGCTGTCTTCTGGGTTGAGTT
TGTCATGCGCCACAAAAGGGCTAAGCACCTGAGATCACTTGGACATAACCTTACCTGGCACCAGTACCAC
TTTCTAGATGTGATCGGCTTCCTACTCTCTTGTGTTGCAGTCACTATAGTTCTTACTGTAAAGTGCCTCT
TGTTCATTTACCGATTCTTTGTAAAGAAAGAAAAGAAAATTAAGAATGAGTAG

Translation (530 aa):
MPGKWISALLLLQISCCFRSVKCGKVLVWPMEFSHWMNIKIILDELVQRGHEVTVLRPSAYYVLDPKKSP
GLKFETFPTSVSKDNLENFFIKFVDVWTYEMPRDTCLSYSPLLQNMIDEFSDYFLSLCKDVVSNKELMTK
LQESKFDVLLSDPVASCGELIAELLQIPFLYSIRFSPGYQIEKSSGRFLLPPSYVPVILSGLGGQMTFIE
RVKNMICRLYFDFWFQMFNDKKWDSFYSEYLGRPTTLAETMGKAEMWLIRSNWDLEFPHPTLPNVDYVGG
LHCKPAKPLPKDMEEFVQSSGDHGVVVFSLGSMVSNMTEEKANTIAWALAQIPQKVLWKFDGKTPATLGH
NTRVYKWLPQNDLLGHPKTKAFVTHGGANGVYEVIYHGIPMIGIPLFGEQHDNIAHMVAKGAAVTLNIRT
MSRSDVLNALEEVIDNPFYKKNAIWLSTIHHDQPTKPLDRAVFWVEFVMRHKRAKHLRSLGHNLTWHQYH
FLDVIGFLLSCVAVTIVLTVKCLLFIYRFFVKKEKKIKNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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