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Report for CCDS19392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19392.1 Public Mus musculus 5 Sult1e1 23 108 98 CCDS HistoryNCBI Gene:20860Re-query CCDS DB by CCDS ID:19392.1Re-query CCDS DB by GeneID:20860See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031201.8 ENSMUSP00000031201.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031201.8Link to Ensembl Protein Viewer:ENSMUSP00000031201.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031201Re-query CCDS DB by Protein ID:ENSMUSP00000031201
Original member Current member NCBI NM_023135.2 NP_075624.2 Accepted alive Link to Nucleotide Sequence:NM_023135.2Link to Protein Sequence:NP_075624.2Re-query CCDS DB by Nucleotide ID:NM_023135Re-query CCDS DB by Protein ID:NP_075624Link to BLAST:NP_075624.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075624.2 295 P49891 295 99.661% 0 1

Chromosomal Locations for CCDS 19392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87576209 87576321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87578479 87578659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87579828 87579922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87581918 87582044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87586714 87586811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87587544 87587669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87590073 87590220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGAGACTTCTATGCCTGAGTATTATGAAGTTTTTGGAGAGTTCCGTGGAGTTCTAATGGACAAACGGT
TCACCAAATATTGGGAAGATGTTGAAATGTTCTTGGCAAGGCCAGATGACCTTGTCATTGCTACATATCC
TAAATCTGGTACCACCTGGATTAGTGAAGTTGTGTATATGATCTATAAAGAAGGTGATGTGGAAAAATGC
AAGGAGGATGCAATTTTTAACAGAATACCTTATTTGGAGTGCAGAAACGAAGACCTAATAAATGGAATAA
AACAATTAAAAGAGAAGGAATCTCCCAGAATAGTAAAAACTCACCTGCCACCCAAGCTCCTTCCAGCATC
ATTTTGGGAAAAGAATTGCAAGATGATCTATCTTTGCCGGAACGCCAAAGATGTCGCCGTTTCTTATTAC
TACTTTTTGCTAATGATAACTAGTTATCCAAATCCTAAATCTTTTTCTGAATTTGTGGAGAAATTTATGC
AAGGGCAAGTTCCGTATGGTTCCTGGTATGATCATGTGAAAGCTTGGTGGGAAAAGAGTAAGAATTCACG
TGTTTTATTTATGTTCTATGAAGACATGAAAGAGGATATCAGAAGAGAAGTTGTAAAGCTAATAGAGTTC
CTGGAGAGAAAGCCCTCGGCAGAGCTTGTGGACAGAATCGTTCAACACACTTCCTTCCAGGAGATGAAGA
ACAATCCATCCACCAATTATACAATGATGCCAGAGGAAATGATGAATCAAAAAGTATCACCATTCATGCG
AAAGGGAATTATAGGAGACTGGAAGAACCACTTCCCAGAAGCCCTGAGGGAGAGATTTGATGAGCACTAC
AAGCAGCAGATGAAGGATTGCACTGTGAAGTTTAGAATGGAGCTCTGA

Translation (295 aa):
METSMPEYYEVFGEFRGVLMDKRFTKYWEDVEMFLARPDDLVIATYPKSGTTWISEVVYMIYKEGDVEKC
KEDAIFNRIPYLECRNEDLINGIKQLKEKESPRIVKTHLPPKLLPASFWEKNCKMIYLCRNAKDVAVSYY
YFLLMITSYPNPKSFSEFVEKFMQGQVPYGSWYDHVKAWWEKSKNSRVLFMFYEDMKEDIRREVVKLIEF
LERKPSAELVDRIVQHTSFQEMKNNPSTNYTMMPEEMMNQKVSPFMRKGIIGDWKNHFPEALRERFDEHY
KQQMKDCTVKFRMEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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