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Report for CCDS19566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19566.1 Public Mus musculus 5 Mvk 23 108 98 CCDS HistoryNCBI Gene:17855Re-query CCDS DB by CCDS ID:19566.1Re-query CCDS DB by GeneID:17855See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043760.14 ENSMUSP00000036971.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043760.14Link to Ensembl Protein Viewer:ENSMUSP00000036971.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043760Re-query CCDS DB by Protein ID:ENSMUSP00000036971
Original member NCBI NM_023556.3 NP_076045.1 Updated not alive Link to Nucleotide Sequence:NM_023556.3Link to Protein Sequence:NP_076045.1Re-query CCDS DB by Nucleotide ID:NM_023556Re-query CCDS DB by Protein ID:NP_076045
Current member NCBI NM_023556.4 NP_076045.1 Accepted alive Link to Nucleotide Sequence:NM_023556.4Link to Protein Sequence:NP_076045.1Re-query CCDS DB by Nucleotide ID:NM_023556Re-query CCDS DB by Protein ID:NP_076045Link to BLAST:NP_076045.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076045.1 395 Q9R008 395 100% 0 0

Chromosomal Locations for CCDS 19566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114445402 114445479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114446159 114446306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114450277 114450421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114450706 114450861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114452365 114452468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114452880 114452925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114455397 114455487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114455890 114456006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114458895 114459048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114460043 114460191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGTTGTCAGAAGCCCTGCTGGTGTCCGCCCCGGGGAAGGTCATCCTCCATGGAGAACACGCTGTGGTCC
ATGGCAAGGTCGCTCTGGCAGCGGCCTTGAACTTGAGAACTTTCCTCCTGCTGCGACCGCAGAGCAATGG
GAAAGTGAGCGTCAATTTACCCAACATCGGTATTAAGCAGGTGTGGGATGTGGGCATGCTTCAGCGACTG
GACACGAGCTTTCTTGAGCAAGGTGATGTCTCGGTACCCACCTTGGAGCAACTGGAGAAGCTAAAGAAGA
TGGGGGACCTCCCCAGAGACCGTGCAGGCAATGAAGGCATGGCTCTGCTTGCCTTTCTCTACCTGTACCT
GGCAATCTGCCGGAAGCAGAGGACACTCCCGAGCCTGGACATGGTGGTGTGGTCGGAACTTCCCCCCGGG
GCAGGCTTGGGCTCCAGCGCCGCCTACTCTGTGTGTCTGGCAGCCGCCCTCCTGACTGCCTGTGAGGAGG
TCTCCAACCCGCTCAAGGACGGGGTCTCCGTCAGCAGGTGGCCCGAGGAAGATCTGAAGTCAATCAACAA
GTGGGCCTTCGAAGGGGAGAGAGTGATCCATGGGAACCCTTCTGGTGTGGACAATGCCGTCAGCACCTGG
GGCGGAGCCCTGCGCTTCCAGCAAGGGACGATGTCTTCCTTGAAGAGCCTCCCGTCTCTGCAGATCCTGC
TCACCAACACCAAGGTCCCGCGGAGTACCAAGGCCCTTGTGGCTGCTGTCAGAAGCAGGCTGACCAAGTT
CCCTGAGATTGTGGCCCCGCTGCTGACCTCCATTGACGCAATATCCCTGGAGTGTGAGCGCGTGCTAGGG
GAGATGGTGGCAGCTCCAGTTCCGGAACAGTACCTCGTACTAGAAGAGCTGATAGACATGAACCAGCACC
ATCTGAATGCTCTCGGGGTGGGCCACAACTCCCTGGACCAGCTCTGCCAAGTAACGGCAGCACACGGACT
GCACAGCAAGCTGACGGGCGCTGGCGGTGGCGGCTGTGGCATCACCCTCCTGAAGCCAGGTCTAGAGCAA
GCCACAGTGGAGGCAGCCAAGCAGGCCCTGACCAGCTGCGGGTTTGACTGCTGGGAGACCAGCATCGGCG
CACCCGGAGTTTCCACACACTCAGCTGCAGCTGTAGGGGACCCTGTCCGACAAGCCCTGGGCCTCTGA

Translation (395 aa):
MLSEALLVSAPGKVILHGEHAVVHGKVALAAALNLRTFLLLRPQSNGKVSVNLPNIGIKQVWDVGMLQRL
DTSFLEQGDVSVPTLEQLEKLKKMGDLPRDRAGNEGMALLAFLYLYLAICRKQRTLPSLDMVVWSELPPG
AGLGSSAAYSVCLAAALLTACEEVSNPLKDGVSVSRWPEEDLKSINKWAFEGERVIHGNPSGVDNAVSTW
GGALRFQQGTMSSLKSLPSLQILLTNTKVPRSTKALVAAVRSRLTKFPEIVAPLLTSIDAISLECERVLG
EMVAAPVPEQYLVLEELIDMNQHHLNALGVGHNSLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLEQ
ATVEAAKQALTSCGFDCWETSIGAPGVSTHSAAAVGDPVRQALGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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