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Report for CCDS19606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19606.1 Public Mus musculus 5 Nos1 23 108 98 CCDS HistoryNCBI Gene:18125Re-query CCDS DB by CCDS ID:19606.1Re-query CCDS DB by GeneID:18125See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000142742.8 ENSMUSP00000120421.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142742.8Link to Ensembl Protein Viewer:ENSMUSP00000120421.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142742Re-query CCDS DB by Protein ID:ENSMUSP00000120421
Original member Current member EBI ENSMUST00000171055.1 ENSMUSP00000127432.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171055.1Link to Ensembl Protein Viewer:ENSMUSP00000127432.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171055Re-query CCDS DB by Protein ID:ENSMUSP00000127432
Original member Current member NCBI NM_008712.3 NP_032738.1 Accepted alive Link to Nucleotide Sequence:NM_008712.3Link to Protein Sequence:NP_032738.1Re-query CCDS DB by Nucleotide ID:NM_008712Re-query CCDS DB by Protein ID:NP_032738Link to BLAST:NP_032738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032738.1 1429 Q9Z0J4-1 1429 100% 0 0

Chromosomal Locations for CCDS 19606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 117867217 117867926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117879284 117879410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117893826 117893954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117895781 117895926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117896673 117896835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117897711 117897802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117900471 117900612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117903821 117903960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117905311 117905485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117907990 117908091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117910058 117910252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117910767 117910852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117912723 117912867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117913797 117913901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117914384 117914442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117919396 117919512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117923244 117923418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117925614 117925752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117926453 117926531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117936419 117936612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117938137 117938306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117943125 117943335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117943819 117943906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117945816 117945937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117947420 117947568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117949634 117949828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117952765 117952883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117953798 117953813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4290 nt):
ATGGAAGAGCACACGTTTGGGGTCCAGCAGATCCAACCCAACGTCATTTCTGTCCGTCTCTTCAAACGCA
AAGTGGGAGGTCTGGGCTTCCTGGTGAAGGAACGGGTCAGCAAGCCCCCGGTGATCATCTCAGATCTGAT
CCGAGGAGGTGCCGCGGAGCAGAGCGGCCTTATCCAAGCCGGCGACATCATTCTCGCCGTCAATGATCGG
CCCCTGGTAGACCTCAGCTATGACAGCGCTCTGGAAGTTCTCAGGGGCATTGCCTCTGAGACCCATGTGG
TCCTCATTCTGAGAGGCCCTGAGGGCTTTACTACACACCTGGAGACCACCTTCACAGGGGATGGAACCCC
CAAGACCATCCGTGTGACCCAGCCCCTGGGGACACCCACCAAAGCTGTCGATCTGTCTCGCCAGCCATCA
GCCAGCAAAGACCAGCCATTAGCAGTAGACAGGGTCCCAGGTCCCAGTAACGGACCTCAGCATGCCCAAG
GCCGTGGACAGGGAGCCGGCTCAGTCTCCCAGGCTAATGGTGTGGCCATTGACCCCACAATGAAAAATAC
CAAGGCCAACCTCCAGGACAGCGGAGAACAGGATGAACTGCTCAAAGAGATAGAACCTGTGTTGAGCATC
CTCACCGGTGGGGGAAAAGCAGTCAACAGAGGGGGACCAGCCAAAGCAGAGATGAAAGACACAGGAATCC
AGGTGGACAGAGACCTCGACGGCAAACTGCACAAAGCTCCGCCCCTGGGCGGGGAGAATGATCGAGTCTT
CAATGATCTGTGGGGGAAGGGCAACGTCCCTGTGGTCCTCAACAACCCGTATTCAGAGAACGAACAGTCT
CCCGCCTCGGGCAAACAGTCTCCTACCAAGAATGGCAGTCCTTCCAGGTGCCCTCGCTTCCTTAAGGTCA
AGAACTGGGAGACAGATGTGGTCCTCACTGACACCCTGCACCTGAAGAGCACGCTGGAAACGGGGTGCAC
AGAGCAGATCTGCATGGGCTCCATCATGCTGCCATCCCATCACATACGGAAGTCAGAAGATGTCCGCACC
AAGGACCAGCTCTTCCCTCTAGCCAAAGAATTTCTCGACCAATACTACTCCTCCATTAAGAGGTTTGGCT
CCAAGGCCCACATGGACAGGCTGGAGGAGGTGAACAAGGAGATCGAGAGCACCAGCACCTACCAGCTCAA
GGACACGGAGCTCATCTATGGCGCCAAGCATGCCTGGCGGAACGCCTCTCGCTGTGTGGGCAGGATCCAG
TGGTCCAAGCTGCAGGTGTTCGATGCCCGAGACTGCACCACAGCCCATGGGATGTTCAACTACATCTGTA
ACCACGTCAAGTACGCCACCAACAAAGGGAACCTCAGGTCGGCCATCACTATATTCCCTCAAAGGACTGA
TGGCAAGCATGACTTCCGAGTGTGGAACTCGCAGCTCATCCGCTATGCCGGCTACAAGCAGCCAGATGGC
TCTACCTTGGGCGATCCAGCTAATGTGGAGTTCACAGAGATCTGTATACAGCAGGGCTGGAAACCCCCAA
GAGGCCGGTTCGATGTGCTGCCTCTCCTGCTCCAGGCCAATGGCAATGACCCTGAACTCTTTCAGATCCC
CCCAGAGCTGGTGCTGGAAGTACCCATCAGGCACCCCAAGTTCGACTGGTTTAAGGACCTGGGGCTCAAA
TGGTATGGCCTCCCCGCTGTGTCCAACATGCTGCTGGAGATTGGGGGCCTGGAGTTCAGCGCCTGTCCCT
TTAGTGGCTGGTACATGGGCACGGAGATTGGCGTTCGTGATTACTGTGACAACTCTCGATACAACATCCT
GGAGGAAGTAGCCAAGAAAATGGATTTGGACATGAGGAAGACATCCTCCCTCTGGAAGGACCAAGCCCTG
GTGGAGATTAACATTGCTGTCCTATACAGCTTCCAGAGTGACAAGGTGACCATTGTGGACCACCACTCTG
CCACCGAGTCCTTCATCAAACACATGGAGAATGAGTACCGCTGCAGAGGGGGCTGTCCCGCCGACTGGGT
GTGGATTGTGCCCCCCATGTCGGGCAGCATCACCCCTGTCTTCCACCAGGAGATGCTCAACTACCGGCTC
ACCCCGTCCTTTGAGTACCAGCCTGATCCATGGAACACCCACGTGTGGAAGGGCACCAATGGGACCCCCA
CGAAGCGGCGAGCCATTGGCTTCAAGAAATTGGCAGAGGCCGTCAAGTTCTCAGCCAAGCTGATGGGACA
GGCCATGGCCAAGAGAGTCAAAGCGACCATTCTCTACGCCACCGAGACAGGCAAATCCCAAGCCTATGCC
AAGACCCTGTGCGAGATCTTCAAGCATGCCTTCGATGCCAAGGCTATGTCCATGGAGGAATATGACATCG
TGCACCTGGAGCACGAAGCCCTGGTCTTGGTGGTCACCAGCACCTTTGGCAATGGAGACCCCCCAGAGAA
TGGGGAGAAATTCGGCTGTGCTTTGATGGAGATGAGGCACCCCAACTCTGTGCAAGAGGAGAGGAAGAGC
TACAAGGTCCGATTCAACAGCGTCTCCTCCTATTCTGACTCCCGCAAGTCATCAGGCGATGGACCAGACC
TCAGAGACAACTTTGAAAGTACTGGACCGCTGGCCAATGTGAGGTTCTCAGTCTTCGGCCTGGGCTCTCG
GGCATACCCTCACTTCTGTGCCTTTGGGCACGCAGTGGACACTCTCCTGGAGGAGCTGGGCGGGGAGAGG
ATTCTGAAGATGAGGGAGGGAGATGAGCTCTGCGGACAGGAAGAGGCTTTCAGGACCTGGGCTAAGAAAG
TCTTCAAGGCAGCCTGTGATGTGTTCTGTGTGGGGGATGACGTCAACATTGAGAAGGCGAACAATTCCCT
CATTAGCAATGACCGCAGCTGGAAGAGGAATAAATTCCGCCTCACTTATGTGGCAGAAGCTCCAGAGCTG
ACCCAAGGTCTTTCCAATGTTCACAAAAAGCGAGTCTCAGCCGCCCGACTCCTCAGCCGCCAAAACCTGC
AAAGTCCTAAATCCAGCCGATCGACCATCTTCGTGCGTCTCCACACCAACGGGAATCAGGAGTTGCAGTA
CCAGCCAGGGGACCACCTGGGTGTCTTCCCTGGCAACCATGAGGACCTCGTGAATGCACTCATTGAACGG
CTGGAGGACGCGCCGCCTGCCAACCACGTGGTGAAGGTGGAAATGCTGGAGGAAAGGAACACGGCTCTGG
GTGTCATCAGTAATTGGAAGGATGAATCTCGCCTCCCACCCTGCACCATCTTCCAGGCCTTCAAGTACTA
CCTGGACATCACCACGCCGCCCACGCCCCTGCAGCTGCAGCAGTTCGCCTCCCTGGCCACCAATGAGAAA
GAGAAGCAGCGGCTGCTGGTCCTCAGCAAGGGGCTTCAGGAATATGAGGAATGGAAATGGGGCAAGAACC
CCACAATGGTGGAGGTGCTGGAGGAGTTCCCGTCCATCCAGATGCCGGCCACACTTCTCCTCACACAGCT
GTCGCTGCTACAACCTCGCTACTATTCCATCAGCTCCTCTCCAGACATGTACCCCGACGAGGTGCACCTC
ACCGTGGCCATCGTGTCCTACCATACCCGAGATGGAGAAGGACCGGTTCACCACGGGGTGTGCTCCTCCT
GGCTCAACCGAATACAGGCTGACGATGTCGTCCCCTGCTTCGTGAGAGGTGCCCCTAGCTTCCACCTGCC
TCGAAACCCCCAGGTGCCTTGCATCCTGGTTGGCCCAGGCACCGGCATCGCTCCCTTCCGAAGTTTTTGG
CAACAGCGACAATTTGACATCCAACACAAAGGAATGAATCCGTGCCCCATGGTTCTGGTCTTCGGGTGTC
GACAATCCAAGATAGATCATATCTACAGAGAGGAGACCCTGCAGGCCAAGAACAAGGGCGTCTTCAGAGA
GCTGTACACTGCCTACTCCCGGGAACCCGACAGGCCAAAGAAATATGTACAGGACGTGCTGCAGGAACAG
CTGGCCGAGTCTGTGTACCGCGCCCTGAAGGAGCAAGGAGGCCATATTTATGTCTGCGGGGACGTTACCA
TGGCCGCTGATGTCCTCAAAGCCATCCAGCGCATAATGACCCAGCAGGGGAAACTCTCGGAGGAGGATGC
TGGTGTGTTCATCAGCAGGCTGAGGGATGACAACCGGTACCACGAGGACATCTTTGGGGTCACCCTCAGA
ACATATGAAGTGACCAACCGCCTTAGATCTGAGTCCATCGCCTTCATTGAAGAGAGCAAAAAAGACACAG
ATGAGGTTTTCAGCTCCTAA

Translation (1429 aa):
MEEHTFGVQQIQPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDR
PLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQPLGTPTKAVDLSRQPS
ASKDQPLAVDRVPGPSNGPQHAQGRGQGAGSVSQANGVAIDPTMKNTKANLQDSGEQDELLKEIEPVLSI
LTGGGKAVNRGGPAKAEMKDTGIQVDRDLDGKLHKAPPLGGENDRVFNDLWGKGNVPVVLNNPYSENEQS
PASGKQSPTKNGSPSRCPRFLKVKNWETDVVLTDTLHLKSTLETGCTEQICMGSIMLPSHHIRKSEDVRT
KDQLFPLAKEFLDQYYSSIKRFGSKAHMDRLEEVNKEIESTSTYQLKDTELIYGAKHAWRNASRCVGRIQ
WSKLQVFDARDCTTAHGMFNYICNHVKYATNKGNLRSAITIFPQRTDGKHDFRVWNSQLIRYAGYKQPDG
STLGDPANVEFTEICIQQGWKPPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLK
WYGLPAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQAL
VEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNYRL
TPSFEYQPDPWNTHVWKGTNGTPTKRRAIGFKKLAEAVKFSAKLMGQAMAKRVKATILYATETGKSQAYA
KTLCEIFKHAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKS
YKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGER
ILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKANNSLISNDRSWKRNKFRLTYVAEAPEL
TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIER
LEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEK
EKQRLLVLSKGLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHL
TVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFW
QQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQ
LAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIFGVTLR
TYEVTNRLRSESIAFIEESKKDTDEVFSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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