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Report for CCDS19675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19675.1 Public Mus musculus 5 Kmt5a 23 108 98 CCDS HistoryNCBI Gene:67956Re-query CCDS DB by CCDS ID:19675.1Re-query CCDS DB by GeneID:67956See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059580.10 ENSMUSP00000052953.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059580.10Link to Ensembl Protein Viewer:ENSMUSP00000052953.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059580Re-query CCDS DB by Protein ID:ENSMUSP00000052953
Original member NCBI NM_030241.3 NP_084517.2 Updated not alive Link to Nucleotide Sequence:NM_030241.3Link to Protein Sequence:NP_084517.2Re-query CCDS DB by Nucleotide ID:NM_030241Re-query CCDS DB by Protein ID:NP_084517
Current member NCBI NM_030241.4 NP_084517.2 Accepted alive Link to Nucleotide Sequence:NM_030241.4Link to Protein Sequence:NP_084517.2Re-query CCDS DB by Nucleotide ID:NM_030241Re-query CCDS DB by Protein ID:NP_084517Link to BLAST:NP_084517.2

Chromosomal Locations for CCDS 19675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124440006 124440015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124445969 124446084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124447214 124447370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124450661 124450880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124451286 124451373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124457059 124457118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124459775 124459965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124460488 124460698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCTAGAGGCAGGAAGATGTGCAAGCCCCGCGCGGTGGAGGCGGCGGCGGCGGCGGTGGCGGCGACGG
CCCCGGGCCCGGAGATGGTGGAGCAGAGGGGCCCGGGGAGGCCCCGCAGCGACGGGGAGAACGTGTTTGC
TGGGCAGTCAAAGATCTATGCCTACATGAGTCCGAACAAGTGCTCTGCAATGCGCTCTCCACTTCAGGAA
GAGAACTCGGTTGCCCATCATGAGGTCAAATGCCCGGGGAAACCATTAGCTGGAATCTACAGGAAGCGAG
AAGAGAAAAGGAACACCGGGAACGTTATACGAAGCGCTGTGAAGTCAGATGAACAGAAGAGCAAAGACAC
CAGGAGAGGTCCCCTGGCGCCTTTTCCAAACCAAAAATCCGAAGCAGCAGAACCTCCAAAAACTCCACCC
CCATCATGTGATTCTACCAATGTAGCAGTCGCTAAGCAAGCCCTGAAAAAGTCCCTCAAGGGCAAACAGG
CCCCTCGGAAAAAGTCTCAAGGGAAAACCCAGCAGAATAGAAAACTCACAGATTTCTACCCTGTGCGGAG
GAGTTCCCGGAAGAGCAAAGCTGAGCTGCAGTCTGAAGAAAGGAAGAAAATAGATGAGCTGATTGAGAGC
GGGAAGGAAGAAGGCATGAAGATTGATCTAATTGATGGCAAAGGCAGGGGTGTGATCGCTACCAAGCAGT
TCTCCAGGGGAGACTTTGTGGTAGAATACCATGGGGACCTCATTGAAATCACTGATGCCAAGAAGCGGGA
GGCTCTGTACGCACAGGACCCCTCCACTGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTAC
TGCGTGGATGCCACTCAAGAAACGAACCGCCTAGGGAGACTCATCAATCACAGTAAGTGTGGGAACTGCC
AGACCAAACTGCACGACATCGACGGCGTGCCTCACCTCATCCTCATCGCCTCCCGAGACATCGCAGCTGG
GGAGGAGCTCCTGTACGACTATGGGGACCGAAGCAAGGCCTCCATCGAAGCCTACCCCTGGCTGAAGCAC
TAA

Translation (350 aa):
MARGRKMCKPRAVEAAAAAVAATAPGPEMVEQRGPGRPRSDGENVFAGQSKIYAYMSPNKCSAMRSPLQE
ENSVAHHEVKCPGKPLAGIYRKREEKRNTGNVIRSAVKSDEQKSKDTRRGPLAPFPNQKSEAAEPPKTPP
PSCDSTNVAVAKQALKKSLKGKQAPRKKSQGKTQQNRKLTDFYPVRRSSRKSKAELQSEERKKIDELIES
GKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTY
CVDATQETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGDRSKASIEAYPWLKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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