NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19687.1 Public Mus musculus 5 Aacs 23 108 98 CCDS HistoryNCBI Gene:78894Re-query CCDS DB by CCDS ID:19687.1Re-query CCDS DB by GeneID:78894See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031445.4 ENSMUSP00000031445.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031445.4Link to Ensembl Protein Viewer:ENSMUSP00000031445.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031445Re-query CCDS DB by Protein ID:ENSMUSP00000031445
Original member Current member NCBI NM_030210.2 NP_084486.1 Accepted alive Link to Nucleotide Sequence:NM_030210.2Link to Protein Sequence:NP_084486.1Re-query CCDS DB by Nucleotide ID:NM_030210Re-query CCDS DB by Protein ID:NP_084486Link to BLAST:NP_084486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084486.1 672 Q9D2R0 672 100% 0 0

Chromosomal Locations for CCDS 19687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 125475977 125476109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125482830 125482933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125484537 125484657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125489783 125489896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125494907 125495004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125503183 125503297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125503549 125503630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125506149 125506296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125508677 125508757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125509779 125509903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125511640 125511704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125511846 125511968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125512625 125512738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125513102 125513227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125513919 125513988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125514169 125514227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125514928 125515130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125516216 125516353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGTCCAAGCTGGCGCGGCTCGAGCGCGAGGAGATCATGGAGTGCCAGGTGATGTGGGAGCCTGACAGCA
AGAAGGACACGCAGATGGACCGCTTCCGGGCGGCCGTGGGTACCGCCTGCGGCCTGGCGCTTGGGAATTA
CAATGACTTATACCACTGGTCTGTCCGGTCGTATATGGACTTTTGGGCTGAGTTCTGGAAGTTCAGTGGA
ATCGTCTACTCACGCATGTATGATGAGGTTGTGGACACATCCAAAGGGATTGCAGATGTCCCCGAGTGGT
TCAGAGGCAGCCGCCTCAACTACGCAGAGAACCTCCTGCGGCACAAGGAGAACGACAGAGTCGCCCTTTA
CGTGGCCCGGGAAGGCAGAGAGGAGATCGTGAAGGTGACTTTTGAAGAGCTGCGGCAGCAGGTGGCTCTG
TTCGCAGCTGCCATGAGGAAGATGGGCGTGAAGAAAGGGGACCGTGTGGTCGGCTATCTACCCAACAGTG
CGCATGCGGTGGAGGCCATGCTGGCTGCTGCCAGTATTGGGGCCATTTGGAGTTCTACCTCGCCGGACTT
TGGTGTAAATGGTGTCCTGGACCGCTTTTCTCAAATTCAGCCGAAACTTATCTTCTCGGTGGAGGCTGTT
GTCTACAATGGCAAGGAGCATGGTCACCTGGAGAAGCTGCAGCGAGTTGTGAAAGGACTGCCTGACCTGC
AGCGAGTGGTGCTGATCCCCTATGTCCTCCCAAGGGAGAAGATTGACATTTCCAAGATCCCCAACAGTGT
GTTCCTGGATGATTTCCTGGCAAGCGGGACCGGCGCGCAGGCGCCGCAGCTCGAGTTTGAGCAGCTGCCC
TTCAGCCACCCTCTGTTCATCATGTTCTCCTCAGGCACGACGGGAGCGCCCAAGTGCATGGTGCACTCAG
CCGGGGGCACCCTCATCCAGCACCTGAAGGAGCACATGCTACACGGCAACATGACAAGCAGTGACATCCT
GCTCTACTACACCACGGTCGGCTGGATGATGTGGAACTGGATGGTGTCAGCCCTGGCCACAGGAGCATCC
TTGGTCCTGTATGATGGCTCCCCGCTGGTTCCGACCCCCAACGTGTTGTGGGACCTTGTGGACAGGATAG
GGATCACCATCCTGGGAACGGGAGCCAAGTGGCTGTCAGTGCTGGAGGAGAAGGACATGAAGCCAGTGGA
AACTCACAACCTCCACACGCTGCACACGATCCTGTCCACCGGCTCGCCGCTGAAAGCCCAGAGTTACGAG
TATGTGTACAGATGCATCAAGAGCTCCGTGCTCCTGGGCTCCATCTCAGGAGGCACTGACATCATCTCCT
GTTTCATGGGCCAGAACTCCTCTATTCCTGTGTACAAGGGTGAGATCCAAGCCCGGAACCTTGGCATGGC
TGTGGAAGCCTGGGACGAGGAAGGGAAGGCCGTCTGGGGAGCGAGTGGCGAGCTGGTGTGCACTAAGCCC
ATTCCCTGCCAGCCCACGCACTTCTGGAACGACGAGAACGGCAGCAAGTACCGGAAGGCTTACTTCTCCA
AATTCCCAGGTGTCTGGGCACACGGTGACTACTGCAGGATCAACCCCAAAACAGGAGGCATTATCATGCT
GGGCCGTAGTGATGGCACCCTCAACCCCAATGGCGTCCGCTTTGGCAGCTCGGAGATCTACAACATCGTG
GAAGCCTTCGATGAGGTGGAGGACAGCCTGTGTGTACCCCAGTACAACAGAGATGGCGAGGAGCGGGTGG
TCCTGTTCCTGAAGATGGCGTCCGGGCACACTTTCCAGCCTGACCTCGTGAAGCGCATCCGAGACGCCAT
CCGACTTGGCCTGTCTGCCCGCCATGTGCCCAGCCTCATCCTGGAGACCCGAGGCATTCCATACACACTC
AATGGCAAGAAAGTGGAGGTGGCCGTGAAGCAGGTGATGGCTGGGAGGACTGTGGAGCACCGGGGGGCCT
TCTCCAACCCCGAGACCCTCGACCTGTACCGGGACATCCCTGAGCTGCAGGACTTCTGA

Translation (672 aa):
MSKLARLEREEIMECQVMWEPDSKKDTQMDRFRAAVGTACGLALGNYNDLYHWSVRSYMDFWAEFWKFSG
IVYSRMYDEVVDTSKGIADVPEWFRGSRLNYAENLLRHKENDRVALYVAREGREEIVKVTFEELRQQVAL
FAAAMRKMGVKKGDRVVGYLPNSAHAVEAMLAAASIGAIWSSTSPDFGVNGVLDRFSQIQPKLIFSVEAV
VYNGKEHGHLEKLQRVVKGLPDLQRVVLIPYVLPREKIDISKIPNSVFLDDFLASGTGAQAPQLEFEQLP
FSHPLFIMFSSGTTGAPKCMVHSAGGTLIQHLKEHMLHGNMTSSDILLYYTTVGWMMWNWMVSALATGAS
LVLYDGSPLVPTPNVLWDLVDRIGITILGTGAKWLSVLEEKDMKPVETHNLHTLHTILSTGSPLKAQSYE
YVYRCIKSSVLLGSISGGTDIISCFMGQNSSIPVYKGEIQARNLGMAVEAWDEEGKAVWGASGELVCTKP
IPCQPTHFWNDENGSKYRKAYFSKFPGVWAHGDYCRINPKTGGIIMLGRSDGTLNPNGVRFGSSEIYNIV
EAFDEVEDSLCVPQYNRDGEERVVLFLKMASGHTFQPDLVKRIRDAIRLGLSARHVPSLILETRGIPYTL
NGKKVEVAVKQVMAGRTVEHRGAFSNPETLDLYRDIPELQDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH