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Report for CCDS19705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19705.1 Public Mus musculus 5 Gusb 23 108 98 CCDS HistoryNCBI Gene:110006Re-query CCDS DB by CCDS ID:19705.1Re-query CCDS DB by GeneID:110006See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026613.13 ENSMUSP00000026613.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026613.13Link to Ensembl Protein Viewer:ENSMUSP00000026613.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026613Re-query CCDS DB by Protein ID:ENSMUSP00000026613
Original member Current member NCBI NM_010368.2 NP_034498.1 Accepted alive Link to Nucleotide Sequence:NM_010368.2Link to Protein Sequence:NP_034498.1Re-query CCDS DB by Nucleotide ID:NM_010368Re-query CCDS DB by Protein ID:NP_034498Link to BLAST:NP_034498.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034498.1 648 P12265 648 100% 0 0

Chromosomal Locations for CCDS 19705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129989518 129989687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129990017 129990152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129993418 129993594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129995447 129995531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129997780 129997926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129998017 129998195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129998410 129998553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129999341 129999528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129999927 130000069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130000361 130000542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130000757 130000942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130002607 130002816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGTCCCTAAAATGGAGTGCGTGTTGGGTCGCGCTGGGCCAGCTGCTGTGCAGCTGCGCGCTGGCTCTGA
AGGGCGGGATGCTGTTCCCGAAGGAGAGCCCGTCGCGGGAGCTCAAGGCGCTGGACGGACTGTGGCACTT
CCGCGCCGACCTCTCGAACAACCGGCTGCAGGGTTTCGAGCAGCAATGGTACCGGCAGCCGCTACGGGAG
TCGGGCCCAGTCTTGGACATGCCTGTCCCTTCTAGCTTCAATGACATCACCCAAGAAGCAGCCCTTCGGG
ACTTTATTGGCTGGGTGTGGTATGAACGGGAAGCAATCCTGCCACGGCGATGGACCCAAGATACCGACAT
GAGAGTGGTGTTGAGGATCAACAGTGCCCATTATTATGCAGTTGTGTGGGTGAATGGGATTCATGTGGTG
GAACATGAGGGAGGTCACCTCCCCTTTGAGGCTGACATTAGCAAGCTGGTCCAGAGTGGGCCCCTGACCA
CCTGCCGGATCACGATTGCCATCAACAACACACTGACCCCTCATACCCTTCCGCCGGGGACCATCGTCTA
CAAGACTGACACCTCCATGTATCCCAAGGGTTACTTTGTCCAGGACACAAGCTTTGACTTCTTCAACTAT
GCGGGACTGCATCGATCTGTGGTCCTCTATACCACCCCTACCACTTACATCGATGATATCACTGTGATCA
CTAATGTGGAGCAAGACATCGGGCTGGTGACCTACTGGATTTCTGTGCAGGGCAGTGAACATTTCCAGCT
AGAAGTGCAACTTTTGGATGAGGGTGGCAAAGTCGTGGCCCATGGGACAGGGAACCAGGGTCAACTTCAG
GTTCCCAGTGCCAACCTCTGGTGGCCTTACCTGATGCATGAGCATCCAGCCTACATGTACTCCTTGGAGG
TGAAGGTGACAACAACTGAGTCTGTGACTGACTACTACACCCTTCCTATCGGGATTCGAACAGTGGCTGT
CACAAAGAGCAAGTTCCTCATAAACGGGAAGCCCTTCTATTTCCAAGGGGTCAATAAGCACGAGGATTCA
GATATCCGAGGGAAAGGCTTCGACTGGCCGCTGCTGGTAAAGGATTTCAACCTGCTCCGTTGGCTCGGGG
CAAATTCCTTTCGTACCAGCCACTATCCCTACTCAGAGGAGGTACTTCAGCTCTGTGACCGATACGGGAT
TGTGGTCATCGATGAGTGTCCCGGTGTGGGCATTGTGCTACCTCAGAGTTTTGGCAACGAGTCACTTCGG
CACCACCTAGAGGTGATGGAGGAGCTGGTTCGCCGGGACAAAAATCACCCTGCGGTTGTGATGTGGTCTG
TGGCCAATGAGCCTTCCTCTGCTCTGAAACCCGCCGCATATTACTTTAAGACGCTGATCACCCACACCAA
AGCCCTGGACCTCACCCGTCCCGTGACCTTTGTGAGCAACGCCAAATATGATGCAGACCTGGGGGCCCCG
TACGTGGATGTTATCTGTGTAAACAGCTACTTTTCTTGGTATCATGACTATGGGCATTTGGAGGTGATTC
AGCCACAGCTGAATAGCCAGTTTGAGAACTGGTATAAGACGCATCAGAAGCCGATTATCCAGAGCGAGTA
TGGAGCAGACGCAATCCCAGGGATCCACGAGGACCCGCCTCGCATGTTCAGTGAGGAGTACCAGAAGGCT
GTTCTGGAGAATTACCATTCAGTTCTGGATCAGAAACGTAAAGAATACGTGGTCGGAGAGCTCATCTGGA
ATTTCGCCGACTTCATGACGAACCAGTCACCGCTGAGAGTAATCGGAAACAAGAAGGGGATCTTCACTCG
CCAGAGACAGCCCAAAACTTCGGCCTTTATTTTGCGAGAGAGATACTGGAGGATTGCCAACGAAACCGGA
GGTCACGGTTCAGGGCCGAGAACCCAGTGTTTCGGAAGCAGACCGTTCACGTTCTAA

Translation (648 aa):
MSLKWSACWVALGQLLCSCALALKGGMLFPKESPSRELKALDGLWHFRADLSNNRLQGFEQQWYRQPLRE
SGPVLDMPVPSSFNDITQEAALRDFIGWVWYEREAILPRRWTQDTDMRVVLRINSAHYYAVVWVNGIHVV
EHEGGHLPFEADISKLVQSGPLTTCRITIAINNTLTPHTLPPGTIVYKTDTSMYPKGYFVQDTSFDFFNY
AGLHRSVVLYTTPTTYIDDITVITNVEQDIGLVTYWISVQGSEHFQLEVQLLDEGGKVVAHGTGNQGQLQ
VPSANLWWPYLMHEHPAYMYSLEVKVTTTESVTDYYTLPIGIRTVAVTKSKFLINGKPFYFQGVNKHEDS
DIRGKGFDWPLLVKDFNLLRWLGANSFRTSHYPYSEEVLQLCDRYGIVVIDECPGVGIVLPQSFGNESLR
HHLEVMEELVRRDKNHPAVVMWSVANEPSSALKPAAYYFKTLITHTKALDLTRPVTFVSNAKYDADLGAP
YVDVICVNSYFSWYHDYGHLEVIQPQLNSQFENWYKTHQKPIIQSEYGADAIPGIHEDPPRMFSEEYQKA
VLENYHSVLDQKRKEYVVGELIWNFADFMTNQSPLRVIGNKKGIFTRQRQPKTSAFILRERYWRIANETG
GHGSGPRTQCFGSRPFTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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