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Report for CCDS19781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19781.1 Public Mus musculus 5 Cyp3a13 23 108 98 CCDS HistoryNCBI Gene:13113Re-query CCDS DB by CCDS ID:19781.1Re-query CCDS DB by GeneID:13113See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031741.7 ENSMUSP00000031741.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031741.7Link to Ensembl Protein Viewer:ENSMUSP00000031741.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031741Re-query CCDS DB by Protein ID:ENSMUSP00000031741
Original member Current member NCBI NM_007819.4 NP_031845.1 Accepted alive Link to Nucleotide Sequence:NM_007819.4Link to Protein Sequence:NP_031845.1Re-query CCDS DB by Nucleotide ID:NM_007819Re-query CCDS DB by Protein ID:NP_031845Link to BLAST:NP_031845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031845.1 503 Q64464 503 100% 0 0

Chromosomal Locations for CCDS 19781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137894269 137894364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137895183 137895345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137898798 137899024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137900249 137900409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137905530 137905596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137907434 137907561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137909916 137910064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137911539 137911627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137911839 137911952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137915574 137915673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137917518 137917570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137918999 137919092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137921442 137921512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGACCTGATCCCAAACTTTTCCATGGAAACCTGGATGCTCCTGGCTACCAGCCTGGTCCTTCTCTACT
TATATGGAACTCATTCACATGGAATTTTTAAAAAGTTGGGAATTCCTGGGCCAAAACCTCTGCCTTTCTT
GGGGACGATTCTTGCTTACCAGAAGGGCTTCTGGGAATGTGACATACAATGTCATAAAAAATATGGGAAA
ATGTGGGGGTTGTATGACGGTCGACAGCCTGTGCTGGCTATCACAGATCCAGACATAATCAAAACAGTGC
TGGTGAAGGAATGTTACTCTACCTTCACAAACCGGCGGCGCTTTGGTCCAGTGGGTATTTTGAAAAAGGC
CATCTCTATCTCTGAGAATGAAGAATGGAAGAGAATCCGAGCCCTGCTGTCTCCAACCTTCACCAGTGGG
AGGCTCAAGGAGATGTTCCCCATCATTAACCAGTTTACAGATGTGTTGGTGAGAAACATGAGGCAGGGAT
TAGGAGAAGGAAAGCCCACCAGCATGAAAGACATCTTTGGGGCCTACAGCATGGATGTGATCACAGCCAC
CTCATTTGGAGTGAATATTGATTCCCTCAACAACCCACAGGATCCTTTTGTGGAGAAAATCAAGAAGCTC
TTAAAATTTGATATCTTTGATCCACTGTTCCTCTCAGTGACACTCTTTCCATTCCTTACCCCAGTATTTG
ATGCACTAAATGTCTCCTTGTTTCCAAGAGATGTCATAAGCTTTTTTACAACTTCAGTAGAACGAATGAA
AGAGAATCGCATGAAAGAGAAAGAAAAGCAAAGAGTGGATTTTCTTCAGCTGATGATAAACTCCCAGAAT
TACAAAACCAAAGAATCTCATAAAGCATTATCTGATGTGGAGATTGTGGCTCAGTCAGTTATCTTTATTT
TTGCTGGCTATGAGACCACAAGCAGTGCTCTTTCCTTTGCATTGTATTTGCTGGCCATTCACCCTGATGT
ACAGAAGAAACTTCAGGATGAAATTGATGCGGCTCTGCCCAATAAGGCACCTGCCACCTATGATACCCTG
CTACAGATGGAGTATCTAGACATGGTGGTGAATGAAACTCTCAGATTATATCCAATCGCTGGAAGACTTG
AGAGGGTCTGTAAGACAGATGTTGAAATCAATGGGCTATTCATTCCCAAAGGGACTGTGGTGATGATACC
AACCTTTGCTCTTCACAAAGACCCGAAGTACTGGCCAGAGCCTGAGGAATTCCGCCCTGAAAGGTTCAGC
AAGAAGAATCAGGACAGCATCAATCCTTACATGTACCTGCCCTTTGGGAGTGGACCAAGGAACTGCATTG
GCATGAGGTTTGCTCTCATAAACATGAAAGTTGCTCTTGTCAGAGTCCTGCAGAACTTCACTGTCCAGCC
TTGTAAGGAAACTGAGATCCCTTTAAAATTAAGCAAACAAGGACTTCTTCAACCAGAAAACCCACTCCTT
CTAAAAGTTGTGTCCAGAGATGAGACTGTAAGTGATGAATGA

Translation (503 aa):
MDLIPNFSMETWMLLATSLVLLYLYGTHSHGIFKKLGIPGPKPLPFLGTILAYQKGFWECDIQCHKKYGK
MWGLYDGRQPVLAITDPDIIKTVLVKECYSTFTNRRRFGPVGILKKAISISENEEWKRIRALLSPTFTSG
RLKEMFPIINQFTDVLVRNMRQGLGEGKPTSMKDIFGAYSMDVITATSFGVNIDSLNNPQDPFVEKIKKL
LKFDIFDPLFLSVTLFPFLTPVFDALNVSLFPRDVISFFTTSVERMKENRMKEKEKQRVDFLQLMINSQN
YKTKESHKALSDVEIVAQSVIFIFAGYETTSSALSFALYLLAIHPDVQKKLQDEIDAALPNKAPATYDTL
LQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYWPEPEEFRPERFS
KKNQDSINPYMYLPFGSGPRNCIGMRFALINMKVALVRVLQNFTVQPCKETEIPLKLSKQGLLQPENPLL
LKVVSRDETVSDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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