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Report for CCDS19866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19866.1 Public Mus musculus 5 Cyp3a25 23 108 98 CCDS HistoryNCBI Gene:56388Re-query CCDS DB by CCDS ID:19866.1Re-query CCDS DB by GeneID:56388See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19866.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068317.12 ENSMUSP00000065585.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068317.12Link to Ensembl Protein Viewer:ENSMUSP00000065585.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068317Re-query CCDS DB by Protein ID:ENSMUSP00000065585
Original member Current member NCBI NM_019792.2 NP_062766.2 Accepted alive Link to Nucleotide Sequence:NM_019792.2Link to Protein Sequence:NP_062766.2Re-query CCDS DB by Nucleotide ID:NM_019792Re-query CCDS DB by Protein ID:NP_062766Link to BLAST:NP_062766.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062766.2 503 O09158 503 100% 0 0

Chromosomal Locations for CCDS 19866.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145977607 145977702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145981384 145981546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145984870 145985096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145986806 145986966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145989901 145989967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145991436 145991563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145992888 145993036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145993273 145993361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145994865 145994978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145998487 145998586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146001449 146001501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146003031 146003124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146009470 146009540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGAGCTCATCCCCAACCTTTCTATAGAAACCTGGGTGCTGCTGGTTACTAGCCTGGTGCTCTTCTACA
TATATGGGACCTATTCTCATGGCTTGTTTAAGAAACTAGGAATTCCTGGACCAAAACCTCTACCGTTACT
TGGCACCATTTTCAACTACTATGATGGCATGTGGAAATTTGATGAAGATTGCTATAAAAAGTATGGGAAA
ATATGGGGGTTTTATGAGGGCCCACAGCCTATATTGGCTATCATGGATCCAGAGATCATCAAGATTGTGC
TGGTGAAAGAATGTTACTCAGTCTTCACAAACCGTCGGTTTTTTGGGCCAGTGGGATTCATGAAAAAGGC
CATTACCATATCTGAGGATGAAGAATGGAAGAGACTTAGAACACTCCTGTCTCCAACCTTCACCAGTGGC
AAACTCAAGGAGATGTTCCCCATCATGAGACAGTATGGAGATATATTGGTGAGAAACTTGAGACGAGAAG
AAGAGAAAGGGGAGCCCATCAGTATGAAAGACATCTTTGGAGCTTATAGCATGGATGTGATCACTGGCAC
ATCATTTGGCGTGAACGTCGATTCCCTCAATAATCCACAGGATCCCTTTGTGCAGAAAGCCAAGAAGATC
TTAAAATTTAAAATTTTTGATCCATTTCTTCTGTCTATAATTCTGTTTCCATTTCTTACTCCAATATATG
AGATGTTAAACTTTTCCATTTTTCCAAGAGATTCAATGAACTTTTTCAAAAAATTTGTAAAAAGGATGAA
GAAAGAACGCCTTGCTTCAAACCAGAAGAACCGAGTGGATTTTCTACAACTGATGATGAATACTCAGAAC
TCCAAAGGCCAAGAGTCACAGAAAGCTCTTTCTGATCTAGAAATGGCAGCACAAGCTGTTATTTTTATCT
TCGGGGGCTATGATGCCACAAGCACTTCCATTTCCCTCATAATGTATGAACTGGCCACTCACCCTGATGT
GCAAAAAAAACTTCAGGATGAGATTGACAGAACTCTGCCCAATAAGGCACCTGTCACCTATGACGCCCTG
ATGGACATGGAGTACCTGGACATGGTGGTGAATGAAAGTCTAAGATTGTACCCAATTGCTATCAGGCTAG
AAAGGGTCTCAAAAAAAGATGTGGAAATCAATGGAGTGTTCATTCCCAAAGGGACCGTAGTTATGATACC
AATCTATCCTCTTCACCGAAATCCTGAGTACTGGCCAGAGCCTCAGGAATTCTGCCCTGAAAGGTTCAGC
AAGGAGAACAAGGGCAACATTGATCCATATATATACATGCCCTTTGGAAATGGACCCAGGAACTGCATAG
GCATGAGGTTTGCTCTCATCAGCATCAAACTTGCTGTCATAGGAGTCCTGCAGAACTTCACTGTCCAGCC
TTGTGAAGAGACACAGATCCCCCTGAAGATCAGCAGGGAACCAATTTTCCAACCAGAAAAACCCATCATC
CTAAAGGTTGTGTCAAGAGATAAACCCAGAACTGGATCATGA

Translation (503 aa):
MELIPNLSIETWVLLVTSLVLFYIYGTYSHGLFKKLGIPGPKPLPLLGTIFNYYDGMWKFDEDCYKKYGK
IWGFYEGPQPILAIMDPEIIKIVLVKECYSVFTNRRFFGPVGFMKKAITISEDEEWKRLRTLLSPTFTSG
KLKEMFPIMRQYGDILVRNLRREEEKGEPISMKDIFGAYSMDVITGTSFGVNVDSLNNPQDPFVQKAKKI
LKFKIFDPFLLSIILFPFLTPIYEMLNFSIFPRDSMNFFKKFVKRMKKERLASNQKNRVDFLQLMMNTQN
SKGQESQKALSDLEMAAQAVIFIFGGYDATSTSISLIMYELATHPDVQKKLQDEIDRTLPNKAPVTYDAL
MDMEYLDMVVNESLRLYPIAIRLERVSKKDVEINGVFIPKGTVVMIPIYPLHRNPEYWPEPQEFCPERFS
KENKGNIDPYIYMPFGNGPRNCIGMRFALISIKLAVIGVLQNFTVQPCEETQIPLKISREPIFQPEKPII
LKVVSRDKPRTGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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