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Report for CCDS19966.3 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
19966.3 |
Public |
Mus musculus |
6 |
Ahcyl2 |
23 |
108 |
98 |
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Public Note for CCDS 19966.2 |
This CCDS representation uses the most likely start codon based on currently available transcript evidence from mouse and other homologs. However, it should be noted that two other potential upstream start codons exist, both of which are conserved and have strong Kozak signals. The use of these start codons would result in a protein that is 37 aa or 30 aa longer at the N-terminus, respectively. The 5'-most start codon has no transcript support in any species, while only one mouse mRNA, AK165725.1, extends far enough to include the second start codon, which occurs very close to the 5' end. If the transcription start site is at or around this region, the ribosome may not be able to initiate translation there. Alternatively, the region is very GC-rich, so it is also possible that cloning difficulties, e.g., reverse transcriptase pausing, did not allow the true transcription start site to be identified. Due to uncertainty about the location of both the transcription and translation initiation sites, the third start codon is therefore represented based on currently available evidence. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 19966.3
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000115242.8 |
ENSMUSP00000110897.2 |
Accepted |
alive |
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NCBI |
NM_021414.6 |
NP_067389.5 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_067389.5 |
613 |
Q68FL4-1 |
613 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 19966.3
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1842 nt): ATGTCGGTGCAGGTTGTGTCAGCAGCGGCAGCCGCCAAGGTGCCTGAGGTGGAGCTGAAGGATCTGAGCC CCTCCGAGGCGGAGCCCCAGTTGGGACTGAGCGCGGCGGCCGTGGGCGCCATGGTACCCCCAGCGGGTGG CGGGGACCCAGAGGCTCCAGCTCCGGCTCCCGCGGCGGAGCGGCCCCCGGCCCCCGGCCCGGGCTCGGGG CCCACCGCGGCTCTGAGCCCTGCGGCCGGGAAGGTCCCTCAAGCGTCCGCCATGAAGCGGAGCGACCCTC ATCACCAGCACCAGCGGCATCGCGACGGCGGCGAGGCCTTGGTCAGCCCCGACGGCACGGTCACCGAGGC GCCGCGCACGGTCAAGAAGCAGATTCAGTTTGCTGACCAGAAGCAGGAATTCAACAAACGTCCCACCAAA ATCGGACGTCGCTCTTTGTCTCGTTCCATCTCTCAGTCATCTACTGACAGCTATAGCTCAGCTGCCTCAT ATACAGATAGCTCTGACGATGAGACATCCCCCAGGGACAAGCAGCAAAAGAACTCTAAGGGAAGTAGCGA CTTCTGTGTCAAGAACATCAAACAAGCGGAGTTTGGACGCAGAGAAATTGAAATTGCTGAGCAAGAGATG CCTGCCTTGATGGCTTTAAGGAAGAGAGCCCAAGGAGAAAAGCCTTTGGCTGGAGCCAAAATTGTGGGTT GTACGCACATCACTGCTCAGACAGCCGTGCTTATGGAGACACTGGGTGCTCTGGGGGCACAGTGCCGATG GGCTGCCTGCAACATCTACTCCACCCTCAATGAAGTGGCTGCTGCTCTCGCAGAAAGTGGGTTTCCCGTC TTTGCCTGGAAAGGAGAATCAGAAGATGACTTTTGGTGGTGCATTGACAGATGCGTGAATGTGGAGGGCT GGCAGCCAAACATGATACTGGATGATGGAGGAGATCTGACTCACTGGATTTATAAAAAGTATCCCAACAT GTTTAAAAAAATCAAAGGCATAGTCGAGGAGAGTGTTACTGGAGTCCATAGGCTGTACCAACTGTCCAAA GCTGGGAAGCTGTGTGTTCCCGCCATGAACGTCAATGACTCAGTCACTAAGCAGAAATTTGATAACCTCT ACTGTTGCCGTGAATCTATTCTTGACGGACTTAAAAGGACAACAGATATGATGTTTGGTGGAAAGCAGGT GGTGGTCTGTGGCTATGGAGAGGTGGGAAAGGGGTGCTGCGCTGCTCTGAAAGCCATGGGCTCCATTGTG TACGTGACTGAGATTGACCCCATCTGTGCCCTGCAAGCCTGTATGGATGGATTCCGACTAGTGAAGCTGA ATGAAGTCATCCGACAGGTCGACATTGTTATTACTTGCACAGGGAACAAGAATGTGGTAACCAGAGAGCA CTTGGACCGTATGAAGAATAGCTGCATCGTTTGTAACATGGGCCATTCCAACACCGAGATTGATGTGGCC AGCCTGCGGACACCAGAACTGACCTGGGAGAGAGTAAGATCCCAAGTTGATCATGTGATATGGCCTGATG GCAAGAGGATAGTACTGCTGGCAGAGGGCCGTCTACTGAATCTCAGCTGCTCCACAGTGCCTACATTTGT GCTCTCCATCACTGCTACCACTCAGGCTCTCGCCTTGATAGAACTTTACAATGCTCCTGAGGGTCGCTAT AAGCAAGATGTGTACCTGCTACCCAAGAAAATGGATGAGTATGTGGCAAGCCTACACCTGCCCACCTTTG ATGCCCACCTGACAGAGCTAACAGATGAACAAGCCAAGTATCTGGGACTCAACAAGAATGGACCCTTCAA GCCTAACTACTACAGGTATTAA
Translation (613 aa): MSVQVVSAAAAAKVPEVELKDLSPSEAEPQLGLSAAAVGAMVPPAGGGDPEAPAPAPAAERPPAPGPGSG PTAALSPAAGKVPQASAMKRSDPHHQHQRHRDGGEALVSPDGTVTEAPRTVKKQIQFADQKQEFNKRPTK IGRRSLSRSISQSSTDSYSSAASYTDSSDDETSPRDKQQKNSKGSSDFCVKNIKQAEFGRREIEIAEQEM PALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPV FAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSK AGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIV YVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVA SLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRY KQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY
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