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Report for CCDS200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
200.1 Public Homo sapiens 1 PLA2G2E 24 110 108 CCDS HistoryNCBI Gene:30814Re-query CCDS DB by CCDS ID:200.1Re-query CCDS DB by GeneID:30814See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375116.3 ENSP00000364257.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375116.3Link to Ensembl Protein Viewer:ENSP00000364257.3Re-query CCDS DB by Nucleotide ID:ENST00000375116Re-query CCDS DB by Protein ID:ENSP00000364257
Original member Current member NCBI NM_014589.3 NP_055404.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014589.3Link to Protein Sequence:NP_055404.1Re-query CCDS DB by Nucleotide ID:NM_014589Re-query CCDS DB by Protein ID:NP_055404Link to BLAST:NP_055404.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055404.1 142 Q9NZK7 142 100% 0 0

Chromosomal Locations for CCDS 200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 19920307 19920449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19922298 19922404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19922617 19922755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19923520 19923559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGAAATCTCCCCACGTGCTGGTGTTCCTTTGCCTCCTGGTGGCTCTGGTCACCGGGAACCTGGTTCAGT
TTGGGGTGATGATCGAGAAGATGACAGGCAAGTCCGCCCTGCAGTACAACGACTATGGCTGTTACTGCGG
CATCGGTGGCTCCCACTGGCCGGTGGACCAGACTGACTGGTGCTGCCACGCCCACGACTGCTGCTACGGG
CGTCTGGAGAAGCTGGGCTGTGAGCCCAAACTGGAAAAGTATCTTTTCTCTGTCAGCGAACGTGGCATTT
TCTGCGCCGGCAGGACCACCTGCCAGCGGCTGACCTGCGAGTGTGACAAGAGGGCTGCCCTCTGCTTTCG
CCGCAACCTGGGCACCTACAACCGCAAATATGCCCATTATCCCAACAAGCTGTGCACCGGGCCCACCCCG
CCCTGCTGA

Translation (142 aa):
MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSALQYNDYGCYCGIGGSHWPVDQTDWCCHAHDCCYG
RLEKLGCEPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCFRRNLGTYNRKYAHYPNKLCTGPTP
PC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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