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Report for CCDS20007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20007.1 Public Mus musculus 6 Akr1d1 23 108 98 CCDS HistoryNCBI Gene:208665Re-query CCDS DB by CCDS ID:20007.1Re-query CCDS DB by GeneID:208665See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040987.10 ENSMUSP00000048830.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040987.10Link to Ensembl Protein Viewer:ENSMUSP00000048830.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040987Re-query CCDS DB by Protein ID:ENSMUSP00000048830
Original member Current member NCBI NM_145364.2 NP_663339.1 Accepted alive Link to Nucleotide Sequence:NM_145364.2Link to Protein Sequence:NP_663339.1Re-query CCDS DB by Nucleotide ID:NM_145364Re-query CCDS DB by Protein ID:NP_663339Link to BLAST:NP_663339.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663339.1 325 Q8VCX1 325 100% 0 0

Chromosomal Locations for CCDS 20007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 37530245 37530337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37532482 37532646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37536029 37536145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37550206 37550283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37554482 37554604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37557489 37557598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37558369 37558534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37564422 37564504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37567124 37567166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGAACCTCAGCGCTGCACACCACCAAATATCCCTAAGTGATGGGAACAACATTCCACTCATTGGGCTTG
GAACCTACTCAGATCCTAGACCGGTCCCTGGGAAGACCTATGTGGCAGTGAAGACAGCTATTGATGAGGG
GTACCGGCACATTGATGGCGCCTATGTTTACCACAATGAGCATGAAGTCGGTGAGGCCATCAGAGAAAAG
ATAGCAGAAGGGAAGGTAAAGAGGGAAGAGATCTTCTACTGTGGAAAGTTATGGAATACAGAGCATGTCC
CATCAATGGTCCTCCCAGCCCTGGAAAGGACGCTAAAGGCCCTCAAACTAGATTACATAGACCTTTATAT
TATCGAACTGCCCATGGCCTTTAAGCCTGGAAAGGAAATTTACCCTAGAGATGAAAATGGCCGAATTATA
TATGACAAAACAAATCTGTGTGCCACGTGGGAGGCATTGGAAGCTTGCAAAGATGCTGGCTTGGTGAAAT
CCCTTGGGGTGTCTAATTTTAACCGCAGGCAGCTGGAGCTCATCTTGAACAAGCCAGGACTCAAGTACAA
ACCAGTCACTAACCAGGTGGAGTGCCACCCGTATTTCACCCAGACAAAACTCTTGAAATTCTGCCAGCAG
CATGACATCGTCATTGTCGCACATAGCCCCTTAGGGACCTGCCGCAACCCATCATGGGTGAACGTCTCTT
CTCCACCCTTGTTAAATGACGAACTCCTAACCTCACTGGGGAAAAAGTACAATAAGACACAAGCTCAAAT
TGTGTTGCGTTTCAACATCCAGCGAGGGATAGTTGTCATTCCTAAAAGCTTTACCCCCGAAAGGATCAAA
GAAAACTTTCAGATCTTTGACTTTTCTCTCACGGAAGAAGAAATGAAGGACATTGATGCCTTGAATAAAA
ATGTCCGCTATGTGGAGTTGCTCATGTGGAGTGACCATCCTGAATACCCATTTCATGACGAATACTGA

Translation (325 aa):
MNLSAAHHQISLSDGNNIPLIGLGTYSDPRPVPGKTYVAVKTAIDEGYRHIDGAYVYHNEHEVGEAIREK
IAEGKVKREEIFYCGKLWNTEHVPSMVLPALERTLKALKLDYIDLYIIELPMAFKPGKEIYPRDENGRII
YDKTNLCATWEALEACKDAGLVKSLGVSNFNRRQLELILNKPGLKYKPVTNQVECHPYFTQTKLLKFCQQ
HDIVIVAHSPLGTCRNPSWVNVSSPPLLNDELLTSLGKKYNKTQAQIVLRFNIQRGIVVIPKSFTPERIK
ENFQIFDFSLTEEEMKDIDALNKNVRYVELLMWSDHPEYPFHDEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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