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Report for CCDS20018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20018.1 Public Mus musculus 6 Tbxas1 23 108 98 CCDS HistoryNCBI Gene:21391Re-query CCDS DB by CCDS ID:20018.1Re-query CCDS DB by GeneID:21391See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003017.12 ENSMUSP00000003017.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003017.12Link to Ensembl Protein Viewer:ENSMUSP00000003017.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003017Re-query CCDS DB by Protein ID:ENSMUSP00000003017
Original member NCBI NM_011539.3 NP_035669.3 Updated not alive Link to Nucleotide Sequence:NM_011539.3Link to Protein Sequence:NP_035669.3Re-query CCDS DB by Nucleotide ID:NM_011539Re-query CCDS DB by Protein ID:NP_035669
Current member NCBI NM_011539.4 NP_035669.3 Accepted alive Link to Nucleotide Sequence:NM_011539.4Link to Protein Sequence:NP_035669.3Re-query CCDS DB by Nucleotide ID:NM_011539Re-query CCDS DB by Protein ID:NP_035669Link to BLAST:NP_035669.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035669.3 533 P36423 533 100% 0 0

Chromosomal Locations for CCDS 20018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38919153 38919241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38948542 38948635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38951878 38951930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38982121 38982217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39001252 39001368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39017892 39017980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39021039 39021187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39022969 39023099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39027640 39027954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39071356 39071447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39080939 39081076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39083693 39083855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39084296 39084370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGAAGTGTTGGGGCTTCTCAAGTTTGAAGTCAGTGGTACCATAGTGACTGTGACTCTGCTCGTGGCTC
TCTTGGCCCTCCTGAAATGGTACTCCATGTCAGCTTTCTCAAGACTGGAGAAGTTGGGCATCAGGCACCC
CAAGCCTTCTCCTTTTGTTGGAAACTTGATGTTTTTCCGCCAGGGTTTTTGGGAGAGCCAATTGGAACTC
CGAGAGCGATACGGGCCTCTGTGTGGGTACTATCTTGGCCGTCGGATGCACGTTGTCATTTCAGAGCCAG
ACATGATCAAGCAGGTGTTGGTTGAGAACTTCAGTAACTTTTCCAACAGAATGGCCTCAGGTCTGGAACC
CAAGATGGTAGCAGACAGTGTCCTGTTGTTACGTGACAGAAGATGGGAGGAAGTCAGGGGTGCCCTGATG
TCTTCATTCAGTCCTGAAAAGTTGGATGAGATGACACCTCTCATCAGCCAAGCCTGTGAACTTCTCGTGG
CTCACTTAAAACGCTATGCAGCATCCAGGGACGCATTCAACATCCAGAGGTGTTACTGCTGTTACACCAT
AGATGTGGTGGCCAGTGTGGCCTTTGGCACCCAGGTGGACTCCCAGAATTCTCCAGAAGATCCCTTTGTG
CAACACTGCCGGCGTGCTTCCACCTTCTGTATCCCCAGGCCTCTCCTGGTATTAATCTTATCATTTCCAT
CCATAATGGTCCCATTGGCCCGGATTCTGCCCAATAAGAACCGAGATGAACTGAATGGCTTTTTTAACAC
ACTCATTAGGAATGTGATTGCCTTACGGGACCAGCAAGCAGCAGAAGAGAGGCGGAGAGACTTCCTGCAG
ATGGTGCTGGATGCCCAGCACTCCATGAACTCTGTGGGCGTGGAAGGCTTTGACATGGTCCCAGAATCCC
TGTCCTCTTCTGAGTGCACAAAGGAACCACCCCAAAGGTGCCATCCTACCTCCACATCTAAGCCTTTCAC
TGTGGATGAAATTGTGGGCCAGGCCTTCCTCTTCCTCATTGCGGGCCATGAGGTCATCACAAACACGCTG
TCCTTCATCACATACCTGCTGGCCACCCACCCTGACTGCCAGGAGAGGCTTCTGAAAGAGGTGGACCTCT
TCATGGGGAAGCACCCAGCCCCTGAGTACCACAGCCTGCAGGAAGGTCTGCCGTATCTGGACATGGTGAT
TTCAGAGACCCTGAGGATGTACCCACCAGCTTTCAGGTTCACACGGGAGGCAGCACAGGACTGTGAGGTG
CTGGGACAACGTATCCCTGCAGGTACAGTGCTGGAGATAGCTGTGGGTGCCCTACACCATGACCCAGAGC
ACTGGCCGAATCCTGAGACCTTTGACCCTGAAAGGTTCACAGCAGAGGCCCGGCTTCAGCGGAGGCCGTT
CACATACCTGCCCTTTGGAGCTGGCCCCAGGAGCTGCCTCGGAGTGCGGCTGGGCCTGCTGGTGGTCAAG
CTGACAATACTCCAGGTCCTACACAAGTTCCGCTTTGAAGCCAGCCCTGAGACTCAGGTTCCACTTCAGC
TAGAATCCAAATCTGCCCTAGGCCCCAAAAATGGAGTCTACATCAAGATTGTGTCACGCTGA

Translation (533 aa):
MEVLGLLKFEVSGTIVTVTLLVALLALLKWYSMSAFSRLEKLGIRHPKPSPFVGNLMFFRQGFWESQLEL
RERYGPLCGYYLGRRMHVVISEPDMIKQVLVENFSNFSNRMASGLEPKMVADSVLLLRDRRWEEVRGALM
SSFSPEKLDEMTPLISQACELLVAHLKRYAASRDAFNIQRCYCCYTIDVVASVAFGTQVDSQNSPEDPFV
QHCRRASTFCIPRPLLVLILSFPSIMVPLARILPNKNRDELNGFFNTLIRNVIALRDQQAAEERRRDFLQ
MVLDAQHSMNSVGVEGFDMVPESLSSSECTKEPPQRCHPTSTSKPFTVDEIVGQAFLFLIAGHEVITNTL
SFITYLLATHPDCQERLLKEVDLFMGKHPAPEYHSLQEGLPYLDMVISETLRMYPPAFRFTREAAQDCEV
LGQRIPAGTVLEIAVGALHHDPEHWPNPETFDPERFTAEARLQRRPFTYLPFGAGPRSCLGVRLGLLVVK
LTILQVLHKFRFEASPETQVPLQLESKSALGPKNGVYIKIVSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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