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Report for CCDS20381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20381.1 Public Mus musculus 6 Suclg2 23 108 98 CCDS HistoryNCBI Gene:20917Re-query CCDS DB by CCDS ID:20381.1Re-query CCDS DB by GeneID:20917See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204224.2 ENSMUSP00000144827.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204224.2Link to Ensembl Protein Viewer:ENSMUSP00000144827.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204224Re-query CCDS DB by Protein ID:ENSMUSP00000144827
Original member NCBI NM_011507.3 NP_035637.2 Updated not alive Link to Nucleotide Sequence:NM_011507.3Link to Protein Sequence:NP_035637.2Re-query CCDS DB by Nucleotide ID:NM_011507Re-query CCDS DB by Protein ID:NP_035637
Current member NCBI NM_011507.4 NP_035637.2 Accepted alive Link to Nucleotide Sequence:NM_011507.4Link to Protein Sequence:NP_035637.2Re-query CCDS DB by Nucleotide ID:NM_011507Re-query CCDS DB by Protein ID:NP_035637Link to BLAST:NP_035637.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035637.2 433 Q9Z2I8-1 433 100% 0 0

Chromosomal Locations for CCDS 20381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 95475049 95475164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95497597 95497717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95566384 95566526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95569572 95569733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95579139 95579235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95586940 95587029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95588938 95589090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95594660 95594750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95595654 95595753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95655458 95655599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95718689 95718775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGGCGTCCCCGGTGGCCATCGCGGCGCAGGCTGGGAAGCTTCTGCGAGAGCGAGCGCTGCGGCCGCTCC
TGGCGGTCAGGTCCCAGGCCGGTCACTTAACCCCCCGAAGATGGCTGAACCTGCAGGAGTACCAGAGCAA
GAAGCTCATGTCAGAGCACGGAGTGAGAGTGCAGAGGTTCTTTGTTGCCAACACTGCTAAAGAGGCTCTG
GAGGCAGCCAAGAGATTGAATGCAAAAGAAATTGTTTTAAAAGCCCAGATCTTAGCTGGAGGAAGAGGAA
AAGGTGTCTTCAATAGCGGTTTGAAAGGAGGTGTTCATTTAACAAAAGACCCTAAAGTAGTGGGAGAGTT
GGCTCAACAGATGATTGGTTATAATCTAGCAACGAAACAAACTCCAAAAGAAGGTGTGAAAGTTAACAAG
GTGATGGTTGCTGAAGCCCTGGATATTTCTAGAGAAACATACTTGGCCATTCTAATGGACCGGTCCCATA
ATGGCCCTGTGATAGTGGGCAGTCCTCAGGGGGGCGTTGATATTGAGGAAGTGGCAGCTTCCAGTCCAGA
ACTCATCTTTAAGGAGCAGATTGACATCTTTGAAGGGATAAAGGATAGCCAGGCCCAGCGCATGGCAGAA
AATCTGGGCTTCCTTGGGTCTCTGAAAAACCAGGCTGCAGATCAGATTACAAAGCTGTACCATCTCTTCC
TGAAGATTGATGCCACTCAGGTGGAAGTGAACCCCTTCGGTGAAACTCCAGAAGGACAAGTTGTCTGTTT
TGATGCCAAGATAAACTTTGATGACAATGCTGAGTTCCGACAAAAGGACATATTTGCTATGGACGACAAA
TCCGAGAATGAGCCCATTGAAAATGAAGCTGCCAGATACGATCTCAAGTATATAGGACTGGACGGGAACA
TTGCCTGCTTCGTGAATGGTGCTGGGCTGGCCATGGCTACCTGCGACATCATCTTCCTGAACGGAGGGAA
GCCAGCGAACTTCTTGGACCTTGGAGGTGGTGTAAAGGAAGCCCAAGTCTATGAAGCATTCAAACTGCTC
ACGTCTGACCCCAAGGTGGAAGCCATTCTCGTCAATATCTTTGGTGGGATCGTCAACTGTGCCATCATTG
CCAACGGAATCACCAAAGCCTGCCGGGAGCTGGAGCTCAAGGTGCCACTGGTAGTCCGGCTTGAAGGAAC
TAATGTGCAGGAGGCTCAGAATATCCTCAAGAGCAGCGGACTCCCCATCACGTCAGCTGTGGACCTGGAG
GATGCAGCCAAGAAAGCTGTTGCCAGTGTGGCAAAGAAGTGA

Translation (433 aa):
MASPVAIAAQAGKLLRERALRPLLAVRSQAGHLTPRRWLNLQEYQSKKLMSEHGVRVQRFFVANTAKEAL
EAAKRLNAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPKVVGELAQQMIGYNLATKQTPKEGVKVNK
VMVAEALDISRETYLAILMDRSHNGPVIVGSPQGGVDIEEVAASSPELIFKEQIDIFEGIKDSQAQRMAE
NLGFLGSLKNQAADQITKLYHLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDK
SENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQVYEAFKLL
TSDPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVQEAQNILKSSGLPITSAVDLE
DAAKKAVASVAKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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