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Report for CCDS20469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20469.1 Public Mus musculus 6 Csgalnact2 23 108 98 CCDS HistoryNCBI Gene:78752Re-query CCDS DB by CCDS ID:20469.1Re-query CCDS DB by GeneID:78752See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049344.14 ENSMUSP00000039819.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049344.14Link to Ensembl Protein Viewer:ENSMUSP00000039819.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049344Re-query CCDS DB by Protein ID:ENSMUSP00000039819
Original member Current member NCBI NM_001362149.1 NP_001349078.1 Accepted alive Link to Nucleotide Sequence:NM_001362149.1Link to Protein Sequence:NP_001349078.1Re-query CCDS DB by Nucleotide ID:NM_001362149Re-query CCDS DB by Protein ID:NP_001349078Link to BLAST:NP_001349078.1
Original member Current member NCBI NM_030165.3 NP_084441.3 Accepted alive Link to Nucleotide Sequence:NM_030165.3Link to Protein Sequence:NP_084441.3Re-query CCDS DB by Nucleotide ID:NM_030165Re-query CCDS DB by Protein ID:NP_084441Link to BLAST:NP_084441.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349078.1 542 Q8C1F4 542 100% 0 0
NP_084441.3 542 Q8C1F4 542 100% 0 0

Chromosomal Locations for CCDS 20469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118109102 118109394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118114366 118114447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118119610 118119704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118120945 118121123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118124312 118124413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118126122 118126338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118128695 118129355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGTCTAGAAGAGGATCGATTCTGCACAGCCGGACCCAGTGGCTGCTGTTGGGCCTTGCTTTGCTCTTCA
GTTTAGTATTATTTATGTACCTCCTGGAATGTGCCCCCCAGACTGATGGAAATGCTTCTCTTCCTGGTGT
TGTTAGAGAAAATTATGGTAAAGAATATTACCAGGCCCTCCTGCAGGAGCAAGAAGAACATTACCAAACC
AGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAATTACAAGATATGAGTGAGAAGATGA
GAGCCTTGCAAGAGAGAAAGAAGCTAGGGGCTAACGGCGTAGGCTATCCTGGCAACAGAGAGCAGGCACC
CAGTGACCTCTTAGAGTTTCTTCACTCCCAGATCGATAGAGCTGAAGTTAGCGTGGGGGCCAAACTCCCC
AGTGAGTATGGAGTCGTTCCCTTTGAAAGTTTTACTTTAATGAAAGTATTTCAGTTGGAAATGGGTCTCA
CTCGCCATCCTGAAGAAAAGCCAGTTAGAAAAGACAAACGAGACGAACTGGTAGAAGTTATTGAAGCTGG
CGTGGAGGTCATTAATAATCCTGATGAAGATGATGCACAGGAAGATGAGGAGGGTCCCCTTGGAGAGAAA
CTGATATTTAATGAAAATGACTTCATAGAAGGCTATTATCGCACTGAGAGAGATAAAGGCACGCAGTATG
AACTGTTTTTTAAGAAAGCAGACCTTATGGAGTACAGACATGTGACCCTCTTCCGCCCTTTTGGACCTCT
CATGAAAGTGAAGAATGAACTGATCGACATTACAAGATCAGTTATTAATATCATTGTGCCACTTGCGGAG
AGGACAGAGGCGTTTTCACAGTTTATGCAGAACTTCAGAGATGTTTGTATTCATCAAGACAAGAGGATTC
ATCTCACCGTTGTGTATTTTGGGAAAGAAGGACTATCTAAAGTCAAGTCTATTCTAGAATCTGTCTCAAG
TGAGTCTGATTTTCACAATTACACCTTGGTCTCGTTGGACGAAGAATTTAATCGTGGACGAGGACTAAAT
GTGGGTGCCCGAGCTTGGGACAAGGGAGAGGTCTTGATGTTTTTCTGTGATGTTGATATATATTTCTCAG
CTGAATTCCTTAACAGCTGCCGGTTAAATGCTGAGCCAGGTAAAAAGGTGTTTTACCCTGTGGTGTTCAG
TCTTTACAACCCTGCCATTGTCTATGCCAACCAGGACGTGCCGCCCCCTGTGGAGCAGCAGCTGGTTCAT
AAAAAGGACTCTGGTTTTTGGAGAGACTTTGGCTTTGGGATGACCTGTCAATATCAATCGGATTTCCTGA
GTGTCGGTGGATTCGACATGGAAGTAAAAGGCTGGGGTGGAGAAGATGTTCATCTTTACCGAAAATACCT
ACACGGTGATCTTATTGTGATTCGGACTCCAGTTCCCGGTCTTTTCCACCTCTGGCATGAGAAACATTGT
GCAGATGAGCTGACCCCTGAGCAGTACCGAATGTGCATCCAATCCAAAGCCATGAATGAGGCCTCCCACT
CTCACCTGGGAATGATGGTTTTCAGGGAGGAGATAGAGATGCATCTTCGCAAACAGGCATACAGAACAAA
CAGCGAGACTGCTGGGTAA

Translation (542 aa):
MSRRGSILHSRTQWLLLGLALLFSLVLFMYLLECAPQTDGNASLPGVVRENYGKEYYQALLQEQEEHYQT
RATSLKRQIAQLKQELQDMSEKMRALQERKKLGANGVGYPGNREQAPSDLLEFLHSQIDRAEVSVGAKLP
SEYGVVPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDELVEVIEAGVEVINNPDEDDAQEDEEGPLGEK
LIFNENDFIEGYYRTERDKGTQYELFFKKADLMEYRHVTLFRPFGPLMKVKNELIDITRSVINIIVPLAE
RTEAFSQFMQNFRDVCIHQDKRIHLTVVYFGKEGLSKVKSILESVSSESDFHNYTLVSLDEEFNRGRGLN
VGARAWDKGEVLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQDVPPPVEQQLVH
KKDSGFWRDFGFGMTCQYQSDFLSVGGFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKHC
ADELTPEQYRMCIQSKAMNEASHSHLGMMVFREEIEMHLRKQAYRTNSETAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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