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Report for CCDS20735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20735.1 Public Mus musculus 7 Rdh13 23 108 98 CCDS HistoryNCBI Gene:108841Re-query CCDS DB by CCDS ID:20735.1Re-query CCDS DB by GeneID:108841See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008579.13 ENSMUSP00000008579.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008579.13Link to Ensembl Protein Viewer:ENSMUSP00000008579.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000008579Re-query CCDS DB by Protein ID:ENSMUSP00000008579
Original member Current member NCBI NM_175372.4 NP_780581.1 Accepted alive Link to Nucleotide Sequence:NM_175372.4Link to Protein Sequence:NP_780581.1Re-query CCDS DB by Nucleotide ID:NM_175372Re-query CCDS DB by Protein ID:NP_780581Link to BLAST:NP_780581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780581.1 334 Q8CEE7 334 100% 0 0

Chromosomal Locations for CCDS 20735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4427558 4427802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4430394 4430495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4431422 4431634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4434994 4435098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4442594 4442749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4444203 4444321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4445447 4445511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGAGCCGCTTTCTGCTGCCGGTGTCCGTAGTGGGCACGGTGATCGGCGGCACCGTGCTGCTCAAGGACT
ATGTCGCTGGTGGGGCTTGTCCCAGCAAGGCCACCATACCTGGGAAGACTGTTATCGTGACAGGAGCCAA
CACAGGCATCGGGAAACAAACTGCTTTGGAGCTGGCTAAAAGAGGAGGCAACGTCATTCTGGCCTGTCGT
GACATGGAGAAGTGCGAGGTGGCTGCAAAGGACATTCGAGGAGAGACCTTGAATCCCCGCGTACGTGCTG
AACGCCTAGACTTGGCTTCCCTCAAGTCCATCCGAGAGTTTGCAAGGAAGGTCATTAAAGAGGAGGAGCG
AGTAGACATTCTGGTCAACAACGCAGCCGTGATGCGGTGCCCACACTGGACCACTGAGGATGGCTTTGAG
ATGCAGTTTGGTGTCAACTACTTGGGGCATTTTCTATTGACAAATTTGCTGTTGGACAAGCTGAAGGCCT
CGGCCCCATCACGCATCATCAATCTCTCGTCCCTGGCTCACGTTGCTGGGCACATAGACTTCGAGGACTT
GAACTGGCAGATGAAAAAGTATGACACCAAGGCAGCCTACTGCCAGAGCAAGTTGGCTGTTGTCCTCTTC
ACCAAGGAGCTGAGCCACCGGCTGCAAGGCTCTGGTGTGACGGTCAATGCACTGCACCCTGGTGTGGCCA
GGACAGAGCTGGGGCGACATACGGGCATGCACAACTCTGCCTTCTCTGGCTTCATGCTTGGGCCCTTCTT
CTGGCTGCTGTTCAAGAGTCCCCAGCTGGCGGCCCAGCCCAGCACATATCTGGCCGTGGCAGAAGAACTG
GAGAATGTTTCGGGGAAGTACTTTGATGGACTCAGAGAGAAGGCTCCATCTCCTGAGGCTGAAGATGAGG
AAGTAGCCCGCAGACTTTGGACGGAAAGTGCCCGTTTGGTGGGCTTGGCCATGGCTCATGGATCCCCTGG
GAGAGGACATGCCATTCCCAGATAA

Translation (334 aa):
MSRFLLPVSVVGTVIGGTVLLKDYVAGGACPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACR
DMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFE
MQFGVNYLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFEDLNWQMKKYDTKAAYCQSKLAVVLF
TKELSHRLQGSGVTVNALHPGVARTELGRHTGMHNSAFSGFMLGPFFWLLFKSPQLAAQPSTYLAVAEEL
ENVSGKYFDGLREKAPSPEAEDEEVARRLWTESARLVGLAMAHGSPGRGHAIPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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