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Report for CCDS20989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20989.1 Public Mus musculus 7 B3gnt8 23 108 98 CCDS HistoryNCBI Gene:232984Re-query CCDS DB by CCDS ID:20989.1Re-query CCDS DB by GeneID:232984See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076034.7 ENSMUSP00000092277.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076034.7Link to Ensembl Protein Viewer:ENSMUSP00000092277.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076034Re-query CCDS DB by Protein ID:ENSMUSP00000092277
Original member Current member EBI ENSMUST00000206940.1 ENSMUSP00000145797.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206940.1Link to Ensembl Protein Viewer:ENSMUSP00000145797.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206940Re-query CCDS DB by Protein ID:ENSMUSP00000145797
Original member Current member NCBI NM_001036740.2 NP_001031817.1 Accepted alive Link to Nucleotide Sequence:NM_001036740.2Link to Protein Sequence:NP_001031817.1Re-query CCDS DB by Nucleotide ID:NM_001036740Re-query CCDS DB by Protein ID:NP_001031817Link to BLAST:NP_001031817.1
Original member Current member NCBI NM_146184.4 NP_666296.1 Accepted alive Link to Nucleotide Sequence:NM_146184.4Link to Protein Sequence:NP_666296.1Re-query CCDS DB by Nucleotide ID:NM_146184Re-query CCDS DB by Protein ID:NP_666296Link to BLAST:NP_666296.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001031817.1 389 Q8R3I9 389 100% 0 0
NP_666296.1 389 Q8R3I9 389 100% 0 0

Chromosomal Locations for CCDS 20989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 25628147 25629316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGCGTTGCCGCAAGTGCCAGCTCTGCCTGTCAGCACTGCTCACACTCCTGGGCCTCAAAGTATACATCG
AGTGGACATCCGAGTCCTGGCTTAAAAAGGCTGAACCCCGGGGCGCTCTGCCCAGTCCCACACCACCCAA
TGCTGAGCCCACTCTGCCCACCAACCTCTCAGCACGCCTGGGTCAGACTGGCCCACTGTCCTCTGCTTAC
TGGAACCAGCAGCAGCGGCAGCTGGGAGTCCTGCCCAGTACGGACTGTCAGACTTGGGGGACTGTTGCTG
CCTCGGAGATCTTGGACTTCATCCTGTACCCCCAGGAGCTTCGGCGCTTCTTGCTGTCGGCGGCCTGTAG
GAGCTTTCCACTATGGCTGCCTGCAGGAGAAGGCAGCCCTGTGGCCAGCTGCTCTGATAAGGATGTACCC
TACTTGCTACTGGCTGTCAAATCAGAACCAGGACACTTTGCAGCACGGCAGGCTGTGAGGGAGACCTGGG
GCAGCCCAGTTGCTGGGACCCGGTTGCTCTTCCTGCTGGGGTCCCCCCTAGGAATGGGGGGGCCTGACTT
AAGATCACTGGTGACGTGGGAAAGCCGGCGCTATGGTGACCTACTGCTCTGGGACTTCCTGGATGTTCCC
TACAACCGGACACTCAAGGACCTGCTGCTGCTGACCTGGCTGAGCCACCACTGCCCCGATGTCAATTTTG
TCCTGCAGGTTCAGGATGATGCCTTTGTGCACATCCCAGCCCTACTGGAGCACCTGCAGACTCTGCCACC
CACCTGGGCCCGCAGCCTCTACCTGGGTGAGATCTTCACCCAGGCCAAACCGCTCCGCAAGCCCGGAGGA
CCCTTCTATGTGCCGAAGACCTTCTTTGAAGGGGACTATCCAGCCTATGCGAGTGGAGGTGGCTATGTAA
TCTCAGGACGCCTGGCACCCTGGCTGCTGCAGGCGGCAGCTCGCGTGGCACCCTTCCCCTTTGATGATGT
CTACACTGGCTTCTGCTTCCGTGCCCTGGGCTTAGCACCCCGTGCCCATCCAGGCTTCCTCACAGCCTGG
CCAGCAGAACGTACCAGGGACCCCTGCGCCGTGCGAGGCCTGCTCTTGGTGCATCCAGTCAGCCCTCAGG
ACACCATTTGGCTCTGGAGACATCTGTGGGTCCCAGAGCTCCAGTGCTGA

Translation (389 aa):
MRCRKCQLCLSALLTLLGLKVYIEWTSESWLKKAEPRGALPSPTPPNAEPTLPTNLSARLGQTGPLSSAY
WNQQQRQLGVLPSTDCQTWGTVAASEILDFILYPQELRRFLLSAACRSFPLWLPAGEGSPVASCSDKDVP
YLLLAVKSEPGHFAARQAVRETWGSPVAGTRLLFLLGSPLGMGGPDLRSLVTWESRRYGDLLLWDFLDVP
YNRTLKDLLLLTWLSHHCPDVNFVLQVQDDAFVHIPALLEHLQTLPPTWARSLYLGEIFTQAKPLRKPGG
PFYVPKTFFEGDYPAYASGGGYVISGRLAPWLLQAAARVAPFPFDDVYTGFCFRALGLAPRAHPGFLTAW
PAERTRDPCAVRGLLLVHPVSPQDTIWLWRHLWVPELQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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