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Report for CCDS21015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21015.1 Public Mus musculus 7 Itpkc 23 108 98 CCDS HistoryNCBI Gene:233011Re-query CCDS DB by CCDS ID:21015.1Re-query CCDS DB by GeneID:233011See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003850.7 ENSMUSP00000003850.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003850.7Link to Ensembl Protein Viewer:ENSMUSP00000003850.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003850Re-query CCDS DB by Protein ID:ENSMUSP00000003850
Original member Current member NCBI NM_181593.3 NP_853624.1 Accepted alive Link to Nucleotide Sequence:NM_181593.3Link to Protein Sequence:NP_853624.1Re-query CCDS DB by Nucleotide ID:NM_181593Re-query CCDS DB by Protein ID:NP_853624Link to BLAST:NP_853624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853624.1 678 Q7TS72 678 100% 0 0

Chromosomal Locations for CCDS 21015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27208241 27208444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27212312 27212383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27212960 27213061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27214376 27214580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27216952 27217165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27219600 27219702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27227351 27228487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGAGGCGCTGCCCGTGCCGGGGGAGCCTGAGCGAGGCGGAGGCCGGCGCACTGCCAGCCGAGGCCCGCA
TGGGGCTGGAGGCGCTGCGAGGTGGGCGGCGGCGACAGCCTGGACTACAACGACCTGGACCGGGAGCAGG
TGGCCCGACGGGACGGCCGGAGGGGGGCGGTCCCCGGGCCTGGATCGAGGAGTCCAGCCTCCACTCCGAG
GCGGAGAGGACCGACCTCGAGCCTGCGCCGTGTCCGAACGGTCCACAGGCAGAATCCTGTGGAGATGGAC
ACGCGGAGTGCGAAGCAGCTGGCCTAGTAGTTGCGTCGGAGAAGCCCAGGCAAAATAAGGAGCTAGACGG
GTCCAACCTCCAGACACATCCAAGAAGGAACAGCCCCCTGGTTGAGATGGAGATGGCCGGTTCCTGGACA
GATGGCTTTCGAACTGATCTTCACAGATCTGACCTCCAGTCTCGGCCAAAGAGAGCCAGCCTCTGTACCC
AACCAGGGTTTGATGAGTCCTGGACCGAACTGGACAGATCCGATATGTGGCAGACTCTGCCAGAGAGGGA
CAACAAGCCCAGGGTTGATAACCTTAGGACCCACCATGGCGTGTCCAAACTCCAAACTCACCCAGTCTGC
CTCTCACCAGAATCAAGTGCTGATAACTCCGGCAAAGAATTGTCCGCGGATGCTTCCAGGACTCCACATG
ACACCGACGGCTTCTGGATAGAGTCCCAAACTGATGACTCTCTCAAAGGACCTAGTACTCAGACAGCCTG
CAGACAACCTGGGAGTGATGGTTTTTCCTCAAAAGACACTGAGAGTGCCTTGACTCAACCTGGCACTGAT
GGCCTCCGGGATGACAGCGTTTTGGGGGAGTCCAATGGAAATGATCCATTAGATTTATCAGAGCCTGGAG
AGTTGGTGACTAACCTGTGCTCCCACCTGGAGTGCAGCTCCCTGTGTCCTGTGCCCCGCCTTATCATCAC
CCCAGAGACTCCTGAACCTGAGGCCCAGCCGGTGGGACCCCAATCCCGGATTGAGGGGGGCACTGGCGGC
TTCTCTTCTGCCTCCTCTTTTGATGAATCTGAGGATGACTTGGTAGCCGGGGGCGGAGGTACCAGCGATC
CTGAGGACAGAGCTGGAAGCAAGCCCTGGAAGAAGCTGAAGACAGTTCTGAAGTACTCGCCCTTCGTGGT
CTCCTTCCATAAGCACTACTATCCCTGGGTCCAGCTTTCCGGACACGCTGGGAACTTCCAGGCCGGTGAG
GATGGTCGGATTCTGAAACGTTTCTGTCAGTGTGAGCAGCGCAGCCTGGAGCTGCTGATGGGAGACCCCC
TGCGGCCTTTTGTGCCTGCTTATTATGGCATGGTGCAGCGGGATGGCCAGGCCTTCAACCAGATGGAAGA
TCTCCTGGCAGACTTTGAGGGCCCCTCTATCATGGACTGCAAGATGGGCAGCAGGACCTACCTGGAAGAG
GAGCTGGTGAAGGCCAGGGAACGACCCAAGCCCCGGAAGGATATGTATGAGAAGATGGTGGCAGTGGACC
CCGGGGCTCCCACCCCAGAAGAGCATGCTCAGGGTGCCATCACGAAGCCCCGATACATGCAGTGGAGGGA
GACCCTGAGTTCAACTTCCACGCTGGGCTTCCGGATTGAAGGCATCAAGAAGGCTGATGGGACCTGCAAC
ACCAACTTCAAGAAGACACAGGCTCTGGAGCAGGTGACAAAGGTGTTAGAAGACTTTGTGAATGGGGACC
TTGGAATCCTAAGAAAGTACGTGGCGCGACTGGAAGACCTCCGAGAGACTCTGGAAAATTCTCCCTTCTT
CAAGACCCACGAGGTAGTGGGCAGTTCCCTTCTCTTTGTGCATGACCACACTGGCCTGGCCAAGGTCTGG
ATGATTGACTTCGGCAAGACAGTGGCCCTGCCTGACCACCAGATGCTCAGTCACAGGCTGCCTTGGACAG
AGGGCAACCGTGAGGACGGCTACCTCTGGGGTCTGGACAATTTGATCTGCCTCCTTCAGGGGCTGGCCCA
GAGCTGA

Translation (678 aa):
MRRCPCRGSLSEAEAGALPAEARMGLEALRGGRRRQPGLQRPGPGAGGPTGRPEGGGPRAWIEESSLHSE
AERTDLEPAPCPNGPQAESCGDGHAECEAAGLVVASEKPRQNKELDGSNLQTHPRRNSPLVEMEMAGSWT
DGFRTDLHRSDLQSRPKRASLCTQPGFDESWTELDRSDMWQTLPERDNKPRVDNLRTHHGVSKLQTHPVC
LSPESSADNSGKELSADASRTPHDTDGFWIESQTDDSLKGPSTQTACRQPGSDGFSSKDTESALTQPGTD
GLRDDSVLGESNGNDPLDLSEPGELVTNLCSHLECSSLCPVPRLIITPETPEPEAQPVGPQSRIEGGTGG
FSSASSFDESEDDLVAGGGGTSDPEDRAGSKPWKKLKTVLKYSPFVVSFHKHYYPWVQLSGHAGNFQAGE
DGRILKRFCQCEQRSLELLMGDPLRPFVPAYYGMVQRDGQAFNQMEDLLADFEGPSIMDCKMGSRTYLEE
ELVKARERPKPRKDMYEKMVAVDPGAPTPEEHAQGAITKPRYMQWRETLSSTSTLGFRIEGIKKADGTCN
TNFKKTQALEQVTKVLEDFVNGDLGILRKYVARLEDLRETLENSPFFKTHEVVGSSLLFVHDHTGLAKVW
MIDFGKTVALPDHQMLSHRLPWTEGNREDGYLWGLDNLICLLQGLAQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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