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Report for CCDS21109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21109.1 Public Mus musculus 7 Gapdhs 23 108 98 CCDS HistoryNCBI Gene:14447Re-query CCDS DB by CCDS ID:21109.1Re-query CCDS DB by GeneID:14447See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21109.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074758.5 ENSMUSP00000074317.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074758.5Link to Ensembl Protein Viewer:ENSMUSP00000074317.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074758Re-query CCDS DB by Protein ID:ENSMUSP00000074317
Original member Current member NCBI NM_008085.2 NP_032111.1 Accepted alive Link to Nucleotide Sequence:NM_008085.2Link to Protein Sequence:NP_032111.1Re-query CCDS DB by Nucleotide ID:NM_008085Re-query CCDS DB by Protein ID:NP_032111Link to BLAST:NP_032111.1

Chromosomal Locations for CCDS 21109.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30729887 30729959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30730335 30730432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30731902 30732064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30732196 30732347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30732612 30732693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30733052 30733170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30733252 30733342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30736619 30736725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30736923 30737019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30737798 30738035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30739260 30739356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGTCGAGACGTGACGTGGTCCTTACCAATGTTACTGTTGTCCAGCTACGGCGGGACCGATGCCCATGCC
CATGCCCATGTCCATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAGGTTGAGGATCCACCACCCAC
GGTTGAAGAACAGCCACCGCCACCGCCGCCGCCACCTCCACCTCCACCACCACCTCCTCCTCCTCCTCCA
CCCCAGATAGAGCCAGACAAGTTTGAAGAGGCTCCCCCTCCCCCTCCCCCTCCTCCTCCTCCTCCCCCTC
CCCCTCCCCCACCACTCCAAAAGCCAGCTAGAGAGCTGACAGTGGGTATCAATGGATTTGGACGCATTGG
TCGTCTGGTGCTGCGAGTCTGCATGGAGAAGGGCATTAGGGTGGTAGCAGTGAATGACCCATTCATTGAT
CCAGAATACATGGTTTACATGTTCAAATATGACTCCACACATGGTAGATACAAAGGAAACGTGGAACATA
AGAATGGACAACTAGTTGTGGACAACCTTGAGATCAACACGTACCAGTGCAAAGACCCTAAAGAAATCCC
CTGGAGCTCTATAGGGAATCCCTACGTGGTGGAGTGTACAGGCGTCTATCTGTCCATCGAGGCAGCTTCG
GCACATATTTCATCTGGTGCCAGGCGTGTGGTGGTCACTGCACCCTCCCCCGATGCACCCATGTTTGTCA
TGGGAGTGAACGAGAAGGACTATAACCCTGGCTCTATGACCATTGTCAGCAATGCATCCTGTACCACCAA
CTGCCTGGCTCCTCTCGCCAAGGTTATTCATGAAAACTTCGGGATCGTGGAAGGGCTAATGACCACAGTC
CATTCCTACACAGCCACTCAGAAGACAGTGGATGGGCCATCAAAGAAGGACTGGCGAGGTGGCCGCGGCG
CTCACCAAAACATCATCCCATCGTCCACTGGGGCTGCCAAGGCTGTAGGCAAAGTCATCCCAGAGCTCAA
AGGGAAGCTAACAGGAATGGCATTCCGGGTGCCAACCCCAAACGTGTCAGTTGTGGACCTGACCTGCCGC
CTGGCCAAGCCTGCTTCTTACTCGGCTATCACGGAGGCTGTGAAAGCTGCAGCCAAGGGACCTTTGGCTG
GCATCCTTGCTTACACAGAGGACCAGGTGGTCTCCACGGACTTTAACGGCAATCCCCATTCTTCCATCTT
TGATGCTAAGGCTGGAATTGCCCTCAATGACAACTTCGTGAAGCTTGTTGCCTGGTACGACAACGAATAT
GGCTACAGTAACCGAGTGGTCGACCTCCTCCGCTACATGTTTAGCCGAGAGAAGTAA

Translation (438 aa):
MSRRDVVLTNVTVVQLRRDRCPCPCPCPCPCPVIRPPPPKVEDPPPTVEEQPPPPPPPPPPPPPPPPPPP
PQIEPDKFEEAPPPPPPPPPPPPPPPPPLQKPARELTVGINGFGRIGRLVLRVCMEKGIRVVAVNDPFID
PEYMVYMFKYDSTHGRYKGNVEHKNGQLVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAAS
AHISSGARRVVVTAPSPDAPMFVMGVNEKDYNPGSMTIVSNASCTTNCLAPLAKVIHENFGIVEGLMTTV
HSYTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELKGKLTGMAFRVPTPNVSVVDLTCR
LAKPASYSAITEAVKAAAKGPLAGILAYTEDQVVSTDFNGNPHSSIFDAKAGIALNDNFVKLVAWYDNEY
GYSNRVVDLLRYMFSREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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