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Report for CCDS21171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21171.1 Public Mus musculus 7 Etfb 23 108 98 CCDS HistoryNCBI Gene:110826Re-query CCDS DB by CCDS ID:21171.1Re-query CCDS DB by GeneID:110826See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004729.4 ENSMUSP00000004729.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004729.4Link to Ensembl Protein Viewer:ENSMUSP00000004729.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000004729Re-query CCDS DB by Protein ID:ENSMUSP00000004729
Original member Current member NCBI NM_026695.3 NP_080971.2 Accepted alive Link to Nucleotide Sequence:NM_026695.3Link to Protein Sequence:NP_080971.2Re-query CCDS DB by Nucleotide ID:NM_026695Re-query CCDS DB by Protein ID:NP_080971Link to BLAST:NP_080971.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080971.2 255 Q9DCW4 255 100% 0 0

Chromosomal Locations for CCDS 21171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43444148 43444204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43452341 43452499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43452799 43452957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43454518 43454580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43456479 43456637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43457570 43457740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCGGAGCTGCGCGCGCTCGTGGCTGTCAAGAGGGTCATCGACTTCGCTGTGAAGATTCGGGTAAAGC
CG
GACAAGTCTGGAGTGGTCACTGATGGTGTGAAGCACTCCATGAACCCCTTCTGTGAGATTGCAGTGGA
A
GAGGCTGTGCGGCTAAAGGAGAAGAAACTGGTGAAGGAGATCATTGCCGTCAGCTGTGGCCCCTCACAG
TGC
CAGGAGACCATCCGAACTGCTCTGGCCATGGGTGCAGACAGAGGCATCCACGTGGAGATACCAGGGG
CA
CAGGCAGAAAGCTTAGGCCCCCTGCAGGTGGCCCGGGTCCTGGCCAAGCTGGCTGAAAAGGAGAAAGT
G
GACCTTTTGTTCCTGGGCAAGCAGGCTATTGATGATGACTGTAACCAGACAGGTCAGATGACAGCTGGA
CTT
CTGGACTGGCCGCAGGGTACATTCGCCTCTCAGGTGACACTGGAGGGGGACAAGGTAAAAGTGGAAC
GG
GAAATTGACGGGGGTCTGGAGACCCTTCGCCTGAAGCTGCCCGCTGTGGTGACTGCTGACCTAAGGCT
C
AATGAGCCTCGCTATGCCACCCTGCCCAACATCATGAAAGCCAAGAAGAAGAAGATTGAAGTGGTCAAG
GCT
GGAGACCTGGGCGTGGACCTGACCTCCAAGGTCTCTGTGATCAGTGTGGAAGAGCCCCCTCAGCGCT
CA
GCAGGAGTCAAGGTGGAGACCACAGAAGACCTGGTGGCCAAGCTGAAGGAGGTGGGGCGGATCTGA


Translation (255 aa):
MAELRALVAVKRVIDFAVKIRVKPDKSGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEIIAVSCGPSQ
C
Q
ETIRTALAMGADRGIHVEIPGAQAESLGPLQVARVLAKLAEKEKVDLLFLGKQAIDDDCNQTGQMTAG
L
LDWPQ
GTFASQVTLEGDKVKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVVK
A
GDLGVDLTSKVSVISVEEPPQRSAGVKVETTEDLVAKLKEVGRI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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