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Report for CCDS21280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21280.1 Public Mus musculus 7 Tph1 23 108 98 CCDS HistoryNCBI Gene:21990Re-query CCDS DB by CCDS ID:21280.1Re-query CCDS DB by GeneID:21990See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049298.14 ENSMUSP00000037752.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049298.14Link to Ensembl Protein Viewer:ENSMUSP00000037752.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049298Re-query CCDS DB by Protein ID:ENSMUSP00000037752
Original member Current member EBI ENSMUST00000107669.8 ENSMUSP00000103296.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107669.8Link to Ensembl Protein Viewer:ENSMUSP00000103296.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107669Re-query CCDS DB by Protein ID:ENSMUSP00000103296
Original member Current member NCBI NM_001136084.2 NP_001129556.1 Accepted alive Link to Nucleotide Sequence:NM_001136084.2Link to Protein Sequence:NP_001129556.1Re-query CCDS DB by Nucleotide ID:NM_001136084Re-query CCDS DB by Protein ID:NP_001129556Link to BLAST:NP_001129556.1
Original member Current member NCBI NM_009414.3 NP_033440.1 Accepted alive Link to Nucleotide Sequence:NM_009414.3Link to Protein Sequence:NP_033440.1Re-query CCDS DB by Nucleotide ID:NM_009414Re-query CCDS DB by Protein ID:NP_033440Link to BLAST:NP_033440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129556.1 447 P17532 447 100% 0 0
NP_033440.1 447 P17532 447 100% 0 0

Chromosomal Locations for CCDS 21280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46647426 46647600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46649947 46650080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46650891 46650986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46652858 46652984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46653741 46653876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46656860 46657056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46657208 46657275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46660416 46660516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46662007 46662190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46665176 46665301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGATTGAAGACAACAAGGAGAACAAAGAGAACAAAGACCATTCCTCCGAAAGAGGGAGAGTGACTCTCA
TCTTCTCCTTGGAGAATGAAGTCGGAGGACTCATAAAAGTGCTGAAAATCTTCCAGGAGAATCATGTGAG
CCTGTTACACATCGAGTCCCGGAAATCAAAGCAAAGAAATTCAGAATTTGAGATATTTGTTGACTGCGAC
ATCAGCCGAGAACAGTTGAATGACATCTTCCCCCTGCTGAAGTCGCACGCCACCGTCCTCTCGGTGGACT
CGCCCGATCAGCTCACTGCGAAGGAAGACGTTATGGAGACTGTCCCTTGGTTTCCAAAGAAGATTTCTGA
CCTGGACTTCTGCGCCAACAGAGTGCTGTTGTATGGATCCGAACTTGACGCCGACCACCCTGGCTTCAAA
GACAATGTCTATCGTAGAAGACGAAAGTATTTTGCAGAGTTGGCTATGAACTACAAACATGGGGACCCCA
TTCCCAAGATTGAATTCACGGAAGAAGAGATTAAGACCTGGGGGACCATCTTCCGAGAGCTAAACAAACT
CTACCCGACCCACGCCTGCAGGGAGTACCTCAGAAACCTCCCTTTGCTCTCAAAATACTGTGGCTATCGG
GAAGACAACATCCCGCAACTGGAGGATGTCTCCAACTTTTTAAAAGAACGCACTGGGTTTTCCATCCGTC
CTGTGGCTGGTTACCTCTCACCGAGAGATTTTCTGTCGGGGTTAGCCTTTCGAGTCTTTCACTGCACTCA
GTATGTGAGACACAGTTCAGATCCCCTCTACACTCCAGAGCCAGACACCTGCCATGAACTCCTAGGCCAC
GTTCCTCTCTTGGCTGAACCCAGTTTTGCTCAATTCTCCCAAGAAATTGGCCTGGCTTCCCTTGGAGCTT
CAGAGGAGACAGTTCAAAAACTGGCAACGTGCTACTTTTTCACTGTGGAGTTTGGGCTGTGCAAACAAGA
TGGACAGCTGAGAGTCTTTGGGGCCGGCTTGCTTTCTTCCATCAGTGAACTCAAACATGCACTTTCTGGA
CATGCCAAAGTCAAGCCCTTTGATCCCAAGATTGCCTGTAAACAGGAATGTCTCATCACGAGCTTCCAGG
ATGTCTACTTTGTATCTGAGAGCTTTGAAGATGCAAAGGAGAAGATGAGAGAATTTGCCAAGACCGTGAA
GCGCCCGTTTGGACTGAAGTACAACCCGTACACACAGAGTGTTCAGGTTCTCAGAGACACCAAGAGCATA
ACTAGTGCCATGAATGAGTTGCGGTATGACCTTGATGTCATCAGTGATGCCCTCGCTAGGGTCACCAGGT
GGCCCAGTGTGTGA

Translation (447 aa):
MIEDNKENKENKDHSSERGRVTLIFSLENEVGGLIKVLKIFQENHVSLLHIESRKSKQRNSEFEIFVDCD
ISREQLNDIFPLLKSHATVLSVDSPDQLTAKEDVMETVPWFPKKISDLDFCANRVLLYGSELDADHPGFK
DNVYRRRRKYFAELAMNYKHGDPIPKIEFTEEEIKTWGTIFRELNKLYPTHACREYLRNLPLLSKYCGYR
EDNIPQLEDVSNFLKERTGFSIRPVAGYLSPRDFLSGLAFRVFHCTQYVRHSSDPLYTPEPDTCHELLGH
VPLLAEPSFAQFSQEIGLASLGASEETVQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSG
HAKVKPFDPKIACKQECLITSFQDVYFVSESFEDAKEKMREFAKTVKRPFGLKYNPYTQSVQVLRDTKSI
TSAMNELRYDLDVISDALARVTRWPSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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