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Report for CCDS21402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21402.1 Public Mus musculus 7 Slc28a1 23 108 98 CCDS HistoryNCBI Gene:434203Re-query CCDS DB by CCDS ID:21402.1Re-query CCDS DB by GeneID:434203See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026820.10 ENSMUSP00000026820.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026820.10Link to Ensembl Protein Viewer:ENSMUSP00000026820.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026820Re-query CCDS DB by Protein ID:ENSMUSP00000026820
Original member Current member EBI ENSMUST00000119083.1 ENSMUSP00000112421.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119083.1Link to Ensembl Protein Viewer:ENSMUSP00000112421.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119083Re-query CCDS DB by Protein ID:ENSMUSP00000112421
Original member Current member NCBI NM_001004184.3 NP_001004184.2 Accepted alive Link to Nucleotide Sequence:NM_001004184.3Link to Protein Sequence:NP_001004184.2Re-query CCDS DB by Nucleotide ID:NM_001004184Re-query CCDS DB by Protein ID:NP_001004184Link to BLAST:NP_001004184.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004184.2 648 E9PXX9 648 100% 0 0

Chromosomal Locations for CCDS 21402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81115539 81115634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81116485 81116573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81117601 81117692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81122047 81122230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81124868 81125009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81126161 81126274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81127712 81127789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81138162 81138242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81141964 81142044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81153400 81153525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81160965 81161095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81164271 81164439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81164526 81164723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81167966 81168047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81168964 81169062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81169167 81169278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81169540 81169612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGCAGACGACACACCGAGGCAACGAGAGTCCATTTCCCTCACACCTGTGGCCCATGGCCTGGAGAACA
TGGGGGCCGAGTTCCTGGAAATAATGGAGGAAGGCCAGCTCCCACACAGGCACTCAAGCCTGCCAGAGGG
TGGAGGCAGCAGGAGCAAAGCAGTGTGGAAACCCTTCTCCCGATGGAGGAGTCTGCAGCCGACTGTGCAA
GCGAGAAGCCTCTGCAGGGAGCACTGGCAGCTGTTTGAGTGGATCAGCAAAGGCCTGCTCTCTACTGCAT
ACATCGGCTTCTTGATCGTCGCCTGCCTCCTGGACTTCCCGAGGGCGCTGGCGCTGTTCGTCATCACCTG
TGTGGTTCTCGTCTTTCTGGCCTACAATCTGCTAAAGAGGCTTCTGGGGTCCAAGCTGAAGAAGTGTGTG
AAGTTTCAGGGCCACTCTTGCCTGAGCCTCTGGCTGAAGAGAGGTCTAGCCCTTGCTGCTGGCCTGGGTG
TGATCTTGTGGCTATCTCTGGACACCGCCCAGCGGCCGGAACAGCTGGTGTCCTTTGCAGGGATCTGTGT
GTTCCTTGTCCTTCTCTTCGCTGGCTCAAAGCATCACCGTGCTGTGTCATGGAGGGCTGTCTCCTGGGGC
CTTGGGCTGCAGTTTGTGCTTGGACTCTTCGTCATCAGAACAGAGCCAGGATTCGTTGCGTTCCAGTGGC
TAGGTGACCAGATCCGGGTCTTCCTGAGTTACACCGAGGCCGGCTCCAGCTTCGTCTTCGGGGAGGCTCT
GGTCAAGGATGTCTTTGCCTTTCAGGTTTTGCCCATCATCGTCTTTTTCAGCTGCGTCATGTCAGTTCTG
TACTATCTGGGCCTCATGCAGTGGGTGATCCTGAAGATTGCCTGGTTGATGCAGGTCACCATGGGCACCT
CAGCCACTGAAACCCTAAGTGTGGCAGGAAACATCTTTGTGAGCCAGACTGAAGCTCCACTGCTGATCCG
GCCCTATCTGGCAGATATGACACTCTCTGAAGTTCACGTTGTCATGACTGGAGGCTATGCTACTATTGCT
GGCAGCCTCCTGGGCGCCTACATCTCCTTTGGGATTGACGCTTCCTCCTTAATTGCTGCCTCAGTCATGG
CGGCCCCTTGTGCTTTGGCCCTCTCCAAGCTGGTCTACCCAGAGGTGGAGGAGTCCAAGTTCCGGAGTGA
GGAAGGCGTGAAGCTGACGTATGGAGATGCCCAGAACCTCGTGGAAGCAGCCAGCGCTGGGGCTGCCATC
TCAGTGAAGGTCGTTGCCAACATTGCTGCCAATCTGATCGCCTTCCTGGCTGTACTGGCCTTCATCAACG
CTGCCCTCTCCTGGCTGGGGGACATGGTGGACATCCAGGGACTCAGCTTCCAGCTCATCTGCTCCTACGT
CCTGCGGCCTGTGGCCTTCTTGATGGGCGTGGCCTGGGAGGACTGTCCAGTAGTGGCTGAGCTGCTGGGC
ATCAAGCTGTTTCTCAATGAGTTTGTGGCCTATCAAGAGCTTTCCCAGTACAAGCAGCGACGCCTGGCAG
GGGCTGAGGAGTGGCTTGGTGACAAGAAACAGTGGATCTCTGTCAGAGCAGAGATCCTGACGACGTATGC
CCTCTGTGGATTCGCCAACTTCAGCTCCATTGGCATCATGCTGGGGGGTCTGACCTCCATGGTCCCCCAG
CGGAGGAGTGACTTCTCCCAGATTGTGCTACGGGCACTGATCACAGGGGCCTTCGTGTCCCTGGTAAACG
CCTGTGTGGCAGGGATCCTCTATGTGCCCCGGGGGGTCGAGGTGGACTGCATGTCTCTTCTGAACCAAAC
TGTCAGCAGCAGCAGCTTTGAGGTTTACCTGTGCTGTCGCCAAGTCTTCCAAAACACCAGCTTGGAGTTT
GGCCAAGAGGCACTGCACAACTGCTGTCGATTTTACAATCACACAGTCTGCACGTAG

Translation (648 aa):
MADDTPRQRESISLTPVAHGLENMGAEFLEIMEEGQLPHRHSSLPEGGGSRSKAVWKPFSRWRSLQPTVQ
ARSLCREHWQLFEWISKGLLSTAYIGFLIVACLLDFPRALALFVITCVVLVFLAYNLLKRLLGSKLKKCV
KFQGHSCLSLWLKRGLALAAGLGVILWLSLDTAQRPEQLVSFAGICVFLVLLFAGSKHHRAVSWRAVSWG
LGLQFVLGLFVIRTEPGFVAFQWLGDQIRVFLSYTEAGSSFVFGEALVKDVFAFQVLPIIVFFSCVMSVL
YYLGLMQWVILKIAWLMQVTMGTSATETLSVAGNIFVSQTEAPLLIRPYLADMTLSEVHVVMTGGYATIA
GSLLGAYISFGIDASSLIAASVMAAPCALALSKLVYPEVEESKFRSEEGVKLTYGDAQNLVEAASAGAAI
SVKVVANIAANLIAFLAVLAFINAALSWLGDMVDIQGLSFQLICSYVLRPVAFLMGVAWEDCPVVAELLG
IKLFLNEFVAYQELSQYKQRRLAGAEEWLGDKKQWISVRAEILTTYALCGFANFSSIGIMLGGLTSMVPQ
RRSDFSQIVLRALITGAFVSLVNACVAGILYVPRGVEVDCMSLLNQTVSSSSFEVYLCCRQVFQNTSLEF
GQEALHNCCRFYNHTVCT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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