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Report for CCDS21443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21443.1 Public Mus musculus 7 Me3 23 108 98 CCDS HistoryNCBI Gene:109264Re-query CCDS DB by CCDS ID:21443.1Re-query CCDS DB by GeneID:109264See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032856.12 ENSMUSP00000032856.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032856.12Link to Ensembl Protein Viewer:ENSMUSP00000032856.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032856Re-query CCDS DB by Protein ID:ENSMUSP00000032856
Original member NCBI NM_181407.4 NP_852072.2 Updated not alive Link to Nucleotide Sequence:NM_181407.4Link to Protein Sequence:NP_852072.2Re-query CCDS DB by Nucleotide ID:NM_181407Re-query CCDS DB by Protein ID:NP_852072
Current member NCBI NM_181407.5 NP_852072.2 Accepted alive Link to Nucleotide Sequence:NM_181407.5Link to Protein Sequence:NP_852072.2Re-query CCDS DB by Nucleotide ID:NM_181407Re-query CCDS DB by Protein ID:NP_852072Link to BLAST:NP_852072.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852072.2 604 Q8BMF3 604 100% 0 0

Chromosomal Locations for CCDS 21443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 89632911 89633093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89736628 89736761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89739807 89739956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89786426 89786501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89796620 89796781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89806647 89806750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89833697 89833806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89845795 89845892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89846200 89846313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89847924 89848029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89848608 89848750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89849594 89849767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89850333 89850431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89851736 89851897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGGGCGCCGCGCTGGGCACTGGCGCGCGGCTGACCTCCGTGCCTCGCATAGCCTGCAGCAGTCTTCGGC
GCCAGGCACCTTCCGCGCCCGCCCAGGGCTGCCACTCCAAGTCTGGCCCGCCTCGACCCGTACCCCTGAA
GAAGCGCGGATACGATGTCACCAGGAACCCCCATCTCAACAAGGGCATGGCCTTTACACTTGAAGAGAGG
CTGCAGCTCGGCATCCACGGCCTGATCCCCCCTTGCTTCCTCAGCCAGGATGTGCAGCTCCTCCGCATCA
TGAGATACTATGAGAATCAGCAGAGCGACCTGGACAAGTACATCATTCTCATGACTCTCCAAGACCGCAA
CGAGAAGCTCTTCTACCGGGTGTTGACCTCAGACGTGGAGAAGTTCATGCCCATTGTGTACACACCCACT
GTGGGGCTGGCCTGTCAGCACTACGGCCTCACCTTCCGCCGACCCCGTGGGCTGTTCATCACCATTCATG
ACAAGGGCCACATTGCAACAATGCTGAACTCTTGGCCAGAAGACAATATTAAGGCTGTGGTGGTGACTGA
TGGAGAGCGCATACTGGGCTTGGGAGACCTGGGCTGCTACGGCATGGGCATCCCTGTGGGCAAGCTGGCC
CTGTACACAGCATGTGGAGGGGTGAATCCACAGCAGTGCCTTCCTGTCCTGCTAGATGTTGGCACCAACA
ATGAGGAGCTTCTTAGAGACCCTCTGTACATCGGCCTGAAACACCAGCGTGTCCGTGGGGAGGAGTATGA
TGACCTGCTGGATGAATTCATGCAGGCGGTGACAGATAAGTTCGGAATAAATTGCCTCATCCAGTTCGAA
GACTTTGCCAATGCCAATGCCTTCCGTCTACTCAACAAATACCGCAACAAGTACTGTATGTTCAATGATG
ACATCCAAGGCACAGCCTCTGTCGCTGTGGCAGGGATCCTGGCTGCTCTGAGAATCACCAAGAACAGACT
GTCCAATCATGTGTTTGTTTTCCAGGGTGCGGGTGAGGCAGCCATGGGCATTGCCCACCTCCTTGTCATG
GCCCTGGAAAAGGAAGGCATACCCAAGACAGAGGCCATAAAGAAGATCTGGATGGTGGACTCCAAGGGTC
TGATTGTCAAGGGAAGAAGCCACCTAAACCATGAGAAGGAGATGTTTGCCCAAGACCACCCTGAAGTCAA
CTCCCTGGAGGAGGTAGTAAGGCTGGTGAAGCCCACAGCAATTATAGGTGTCGCTGCCATCGCAGGAGCC
TTCACGGAGCAGATTCTGAGGGACATGGCTTCCTTCCATGAGCGCCCTATCGTCTTTGCCCTGAGCAACC
CCACCAGCAAGGCTGAGTGCACAGCTGAGAAGTGCTACCGGGTCACCGAGGGCCGAGGAATCTTTGCCAG
TGGAAGTCCTTTTAAGAGTGTGACTCTGGAAGATGGCAGGACATTCACTCCTGGTCAGGGAAACAATGCC
TATGTGTTTCCTGGGGTAGCTCTGGGTGTCATCGCTGGTGGGATCCGGCACATCCCAGATGAAATCTTCC
TCCTGACGGCAGAGCAAATTGCCCAAGAAGTCTCTGAGCAGCACCTGTCTCAGGGGAGACTCTACCCACC
ACTCAGCACCATCCGAGATGTGTCTCTGAGAATTGCAGTCAAAGTCCTCGACTATGCATACAAACACAAC
TTGGCCTCCTACTATCCAGAGCCCAAGGACAAGGAGGCTTTTGTAAAATCTCTGATCTACACTCCAGACT
ATGACTCCTTCTCACTAGACACCTACAGCTGGCCTAAGGAAGCTATGAGTGTTCAGAAGGTCTGA

Translation (604 aa):
MGAALGTGARLTSVPRIACSSLRRQAPSAPAQGCHSKSGPPRPVPLKKRGYDVTRNPHLNKGMAFTLEER
LQLGIHGLIPPCFLSQDVQLLRIMRYYENQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPT
VGLACQHYGLTFRRPRGLFITIHDKGHIATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLA
LYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGEEYDDLLDEFMQAVTDKFGINCLIQFE
DFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNRLSNHVFVFQGAGEAAMGIAHLLVM
ALEKEGIPKTEAIKKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGVAAIAGA
FTEQILRDMASFHERPIVFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGRTFTPGQGNNA
YVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAVKVLDYAYKHN
LASYYPEPKDKEAFVKSLIYTPDYDSFSLDTYSWPKEAMSVQKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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