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Report for CCDS21747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21747.1 Public Mus musculus 7 Ampd3 23 108 98 CCDS HistoryNCBI Gene:11717Re-query CCDS DB by CCDS ID:21747.1Re-query CCDS DB by GeneID:11717See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21747.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005829.12 ENSMUSP00000005829.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005829.12Link to Ensembl Protein Viewer:ENSMUSP00000005829.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005829Re-query CCDS DB by Protein ID:ENSMUSP00000005829
Original member Current member EBI ENSMUST00000170374.7 ENSMUSP00000130495.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170374.7Link to Ensembl Protein Viewer:ENSMUSP00000130495.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170374Re-query CCDS DB by Protein ID:ENSMUSP00000130495
Original member NCBI NM_001276301.1 NP_001263230.1 Updated not alive Link to Nucleotide Sequence:NM_001276301.1Link to Protein Sequence:NP_001263230.1Re-query CCDS DB by Nucleotide ID:NM_001276301Re-query CCDS DB by Protein ID:NP_001263230
Current member NCBI NM_001276301.2 NP_001263230.1 Accepted alive Link to Nucleotide Sequence:NM_001276301.2Link to Protein Sequence:NP_001263230.1Re-query CCDS DB by Nucleotide ID:NM_001276301Re-query CCDS DB by Protein ID:NP_001263230Link to BLAST:NP_001263230.1
Original member NCBI NM_009667.3 NP_033797.2 Updated not alive Link to Nucleotide Sequence:NM_009667.3Link to Protein Sequence:NP_033797.2Re-query CCDS DB by Nucleotide ID:NM_009667Re-query CCDS DB by Protein ID:NP_033797
Current member NCBI NM_009667.4 NP_033797.2 Accepted alive Link to Nucleotide Sequence:NM_009667.4Link to Protein Sequence:NP_033797.2Re-query CCDS DB by Nucleotide ID:NM_009667Re-query CCDS DB by Protein ID:NP_033797Link to BLAST:NP_033797.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263230.1 766 O08739 766 100% 0 0
NP_033797.2 766 O08739 766 100% 0 0

Chromosomal Locations for CCDS 21747.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 110777804 110778024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110788610 110788814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110791188 110791347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110793640 110793859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110795679 110795808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110800643 110800837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110802432 110802563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110803081 110803244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110803727 110803853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110804825 110804988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110805964 110806084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110807780 110807953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110809796 110809906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110810734 110810910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGCCGCGCCAGTTCCCCAAGTTGAACATGTCCGATTTGGACGAACATGTCCGGCTGTTGGCGGAGAAGG
TGTTTGCTAAGGTGCTCCGAGAAGAGGACAGCAAAGATGTCATGTCCCTGTTTACTGTCCCCGAGGACTG
TCCCATCGGACAGAAGGAAGCCAAGGAGAGGGAGCTACAGAAGGAGCTTGCAGAGCAGAAGTCTGTGGAG
ACAGCAAAAAGAAAGAAGAGTTTCAAGATGATCCGGTCGCAGTCTTTGTCCCTGCAGATGCCAACACAAC
AAGACTGGAAAGGTCCTCCAACTGCCAGTCCTGCCATGTCTCCTGCAACCCCTCTGGTTCCCGGAGCTAC
TTCTAAGCCTGGGCCAGCACCCTATGCTATGCCTGAGTATCAGCGGGTCACCATCAGTGGAGATTACTGT
GCAGGGATCACTGTGGAAGACTATGAGCAGGCTGCCAAGAGCCTGGCCAAGGCCCTGATGATCCGGGAGA
AGTATGCACGGCTTGCCTACCACCGCTTCCCACGGACCACAGCCCAGTACCTGGCTCATCAGGGGGAAAG
TGTGCCTTTGGAAGAGGGTCTCCCAGACTTCCACCCTCCCCCACTGCCCCAGGAAGACCCTTATTGCCTG
GATGATGCACCCCCCAACCTGGGCTACCTGGTTCGCATGCACGGAGGTGTTCTCTTTGTGTATGACAATC
AGACGATGTTGGAACGCCAGGAGCCCCACAGCCTGCCCTACCCTGACCTGGAGACCTACATTGTGGACAT
GAGCCATATTCTGGCACTCATCACTGATGGCCCCACGAAAACCTATTGTCACCGGCGACTGAACTTTCTG
GAATCCAAGTTTAGCCTTCATGAGATGTTAAATGAAATGTCAGAGTTCAAGGAATTGAAGAGTAACCCCC
ACAGAGACTTTTATAATGTGAGAAAGGTAGACACACACATTCATGCAGCGGCCTGCATGAATCAGAAGCA
CCTGCTGCGTTTCATCAAGCACACGTACCAGACAGAGCCCGACAGAACTGTGGCGGAGAAGCTAGGTCGG
AAGATCACCCTGCGGCAGGTGTTTGACAGCCTGCACATGGACCCCTACGACCTCACGGTGGACTCGCTGG
ATGTTCATGCAGGCCGCCAGACATTTCACCGCTTCGACAAGTTCAACTCCAAGTACAACCCCGTGGGGGC
CAGCGAGCTCCGGGACCTGTATCTGAAAACTGAGAACTACCTCGGGGGAGAATACTTTGCTCGCATGGTC
AAGGAAGTGGCCCGGGAGCTAGAGGACAGCAAGTACCAATACTCAGAACCCCGGCTCTCCATCTATGGTC
GCAGTCCCAAGGAGTGGTCTAGCCTGGCCCGCTGGTTCATCCAGCACAAGGTCTACTCACCCAACATGCG
CTGGATCATCCAGGTGCCCCGCATCTATGATATATTTAGGTCAAAGAAACTACTGCCAAACTTTGGGAAG
ATGCTGGAGAACATCTTCCTGCCCCTGTTCAAAGCTACCATCAACCCCCAAGATCATCGGGAGCTTCACC
TCTTCCTTAAATACGTGACTGGGTTTGACAGTGTGGATGACGAATCCAAGCACAGTGACCACATGTTCTC
AGACAAGAGTCCCAGCCCAGACCTCTGGACCAGCGAGCAGAACCCGCCCTATAGTTACTACCTGTACTAC
ATGTATGCCAACATCATGGTGCTGAACAACCTCCGCAGGGAACGAGGCCTGAGCACGTTCCTCTTCCGGC
CTCACTGTGGGGAGGCCGGCTCCATCACTCACCTAGTGTCTGCCTTCCTGACGGCAGACAACATTTCCCA
CGGGCTGCTGCTTAAGAAGAGCCCTGTTTTGCAGTACCTCTACTACCTTGCTCAGATCCCTATTGCCATG
TCTCCTCTCAGCAACAACAGCCTGTTTCTGGAATATTCCAAGAACCCCCTCCGGGAATTCCTGCACAAGG
GACTACATGTCTCTCTCTCTACCGATGACCCCATGCAGTTTCACTACACAAAGGAAGCGCTCATGGAGGA
GTACGCCATTGCGGCACAAGTGTGGAAGCTGAGTACCTGCGACCTGTGTGAGATCGCCAGGAACAGTGTG
CTGCAGAGTGGCCTCTCACATCAGGAGAAGCAGAAGTTTCTGGGTCAGAATTATTACAAGGAAGGACCAG
AGGGCAATGACATTCGAAAGACAAATGTTGCACAGATCCGGATGGCATTCCGCTACGAGACCCTGTGTAA
TGAGCTCAGCTTTCTGTCCGATGCCATGAAGTCCGAGGAGATCACAGCCCTGACCAAATAG

Translation (766 aa):
MPRQFPKLNMSDLDEHVRLLAEKVFAKVLREEDSKDVMSLFTVPEDCPIGQKEAKERELQKELAEQKSVE
TAKRKKSFKMIRSQSLSLQMPTQQDWKGPPTASPAMSPATPLVPGATSKPGPAPYAMPEYQRVTISGDYC
AGITVEDYEQAAKSLAKALMIREKYARLAYHRFPRTTAQYLAHQGESVPLEEGLPDFHPPPLPQEDPYCL
DDAPPNLGYLVRMHGGVLFVYDNQTMLERQEPHSLPYPDLETYIVDMSHILALITDGPTKTYCHRRLNFL
ESKFSLHEMLNEMSEFKELKSNPHRDFYNVRKVDTHIHAAACMNQKHLLRFIKHTYQTEPDRTVAEKLGR
KITLRQVFDSLHMDPYDLTVDSLDVHAGRQTFHRFDKFNSKYNPVGASELRDLYLKTENYLGGEYFARMV
KEVARELEDSKYQYSEPRLSIYGRSPKEWSSLARWFIQHKVYSPNMRWIIQVPRIYDIFRSKKLLPNFGK
MLENIFLPLFKATINPQDHRELHLFLKYVTGFDSVDDESKHSDHMFSDKSPSPDLWTSEQNPPYSYYLYY
MYANIMVLNNLRRERGLSTFLFRPHCGEAGSITHLVSAFLTADNISHGLLLKKSPVLQYLYYLAQIPIAM
SPLSNNSLFLEYSKNPLREFLHKGLHVSLSTDDPMQFHYTKEALMEEYAIAAQVWKLSTCDLCEIARNSV
LQSGLSHQEKQKFLGQNYYKEGPEGNDIRKTNVAQIRMAFRYETLCNELSFLSDAMKSEEITALTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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