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Report for CCDS2178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2178.1 Public Homo sapiens 2 LCT 24 110 108 CCDS HistoryNCBI Gene:3938Re-query CCDS DB by CCDS ID:2178.1Re-query CCDS DB by GeneID:3938See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264162.7 ENSP00000264162.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264162.7Link to Ensembl Protein Viewer:ENSP00000264162.2Re-query CCDS DB by Nucleotide ID:ENST00000264162Re-query CCDS DB by Protein ID:ENSP00000264162
Original member Current member NCBI NM_002299.4 NP_002290.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002299.4Link to Protein Sequence:NP_002290.2Re-query CCDS DB by Nucleotide ID:NM_002299Re-query CCDS DB by Protein ID:NP_002290Link to BLAST:NP_002290.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002290.2 1927 P09848 1927 100% 0 0

Chromosomal Locations for CCDS 2178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 135788324 135788544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135789571 135789798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135790658 135790881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135794641 135794775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135798029 135798138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135800607 135800809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135803930 135804128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135804767 135805057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135807128 135807396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135808443 135809993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135812311 135812956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135817341 135818061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135822020 135822098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135823901 135824003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135829593 135829676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135833111 135833190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135836530 135837169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5784 nt):
ATGGAGCTGTCTTGGCATGTAGTCTTTATTGCCCTGCTAAGTTTTTCATGCTGGGGGTCAGACTGGGAGT
CT
GATAGAAATTTCATTTCCACCGCTGGTCCTCTAACCAATGACTTGCTGCACAACCTGAGTGGTCTCCT
G
GGAGACCAGAGTTCTAACTTTGTAGCAGGGGACAAAGACATGTATGTTTGTCACCAGCCACTGCCCACT
TTC
CTGCCAGAATACTTCAGCAGTCTCCATGCCAGTCAGATCACCCATTATAAGGTATTTCTGTCATGGG
CA
CAGCTCCTCCCAGCAGGAAGCACCCAGAATCCAGACGAGAAAACAGTGCAGTGCTACCGGCGACTCCT
C
AAGGCCCTCAAGACTGCACGGCTTCAGCCCATGGTCATCCTGCACCACCAGACCCTCCCTGCCAGCACC
CTC
CGGAGAACCGAAGCCTTTGCTGACCTCTTCGCCGACTATGCCACATTCGCCTTCCACTCCTTCGGGG
AC
CTAGTTGGGATCTGGTTCACCTTCAGTGACTTGGAGGAAGTGATCAAGGAGCTTCCCCACCAGGAATC
A
AGAGCGTCACAACTCCAGACCCTCAGTGATGCCCACAGAAAAGCCTATGAGATTTACCACGAAAGCTAT
GCT
TTTCAGGGCGGAAAACTCTCTGTTGTCCTGCGAGCTGAAGATATCCCGGAGCTCCTGCTAGAACCAC
CC
ATATCTGCGCTTGCCCAGGACACGGTCGATTTCCTCTCTCTTGATTTGTCTTATGAATGCCAAAATGA
G
GCAAGTCTGCGGCAGAAGCTGAGTAAATTGCAGACCATTGAGCCAAAAGTGAAAGTTTTCATCTTCAAC
CTA
AAACTCCCAGACTGCCCCTCCACCATGAAGAACCCAGCCAGTCTGCTCTTCAGCCTTTTTGAAGCCA
TA
AATAAAGACCAAGTGCTCACCATTGGGTTTGATATTAATGAGTTTCTGAGTTGTTCATCAAGTTCCAA
G
AAAAGCATGTCTTGTTCTCTGACTGGCAGCCTGGCCCTTCAGCCTGACCAGCAGCAGGACCACGAGACC
ACG
GACTCCTCTCCTGCCTCTGCCTATCAGAGAATCTGGGAAGCATTTGCCAATCAGTCCAGGGCGGAAA
GG
GATGCCTTCCTGCAGGATACTTTCCCTGAAGGCTTCCTCTGGGGTGCCTCCACAGGAGCCTTTAACGT
G
GAAGGAGGCTGGGCCGAGGGTGGGAGAGGGGTGAGCATCTGGGATCCACGCAGGCCCCTGAACACCACT
GAG
GGCCAAGCGACGCTGGAGGTGGCCAGCGACAGTTACCACAAGGTAGCCTCTGACGTCGCCCTGCTTT
GC
GGCCTCCGGGCTCAGGTGTACAAGTTCTCCATCTCCTGGTCCCGGATCTTCCCCATGGGGCACGGGAG
C
AGCCCCAGCCTCCCAGGCGTTGCCTACTACAACAAGCTGATTGACAGGCTACAGGATGCGGGCATCGAG
CCC
ATGGCCACGCTGTTCCACTGGGACCTGCCTCAGGCCCTGCAGGATCATGGTGGATGGCAGAATGAGA
GC
GTGGTGGATGCCTTCCTGGACTATGCGGCCTTCTGCTTCTCCACATTTGGGGACCGTGTGAAGCTGTG
G
GTGACCTTCCATGAGCCGTGGGTGATGAGCTACGCAGGCTATGGCACCGGCCAGCACCCTCCCGGCATC
TCT
GACCCAGGAGTGGCCTCTTTTAAGGTGGCTCACTTGGTCCTCAAGGCTCATGCCAGAACTTGGCACC
AC
TACAACAGCCATCATCGCCCACAGCAGCAGGGGCACGTGGGCATTGTGCTGAACTCAGACTGGGCAGA
A
CCCCTGTCTCCAGAGAGGCCTGAGGACCTGAGAGCCTCTGAGCGCTTCTTGCACTTCATGCTGGGCTGG
TTT
GCACACCCCGTCTTTGTGGATGGAGACTACCCAGCCACCCTGAGGACCCAGATCCAACAGATGAACA
GA
CAGTGCTCCCATCCTGTGGCTCAACTCCCCGAGTTCACAGAGGCAGAGAAGCAGCTCCTGAAAGGCTC
T
GCTGATTTTCTGGGTCTGTCGCATTACACCTCCCGCCTCATCAGCAACGCCCCACAAAACACCTGCATC
CCT
AGCTATGATACCATTGGAGGCTTCTCCCAACACGTGAACCATGTGTGGCCCCAGACCTCATCCTCTT
GG
ATTCGTGTGGTGCCCTGGGGGATAAGGAGGCTGTTGCAGTTTGTATCCCTGGAATACACAAGAGGAAA
A
GTTCCAATATACCTTGCCGGGAATGGCATGCCCATAGGGGAAAGTGAAAATCTCTTTGATGATTCCTTA
AGA
GTAGACTACTTCAATCAATATATCAATGAGGTGCTCAAGGCTATCAAGGAAGACTCTGTGGATGTTC
GT
TCCTACATTGCTCGTTCCCTCATTGATGGCTTCGAAGGCCCTTCTGGTTACAGCCAGCGGTTTGGCCT
G
CACCACGTCAACTTCAGCGACAGCAGCAAGTCAAGGACTCCCAGGAAATCTGCCTACTTTTTCACTAGC
ATC
ATAGAAAAGAACGGTTTCCTCACCAAGGGGGCAAAAAGACTGCTACCACCTAATACAGTAAACCTCC
CC
TCCAAAGTCAGAGCCTTCACTTTTCCATCTGAGGTGCCCTCCAAGGCTAAAGTCGTTTGGGAAAAGTT
C
TCCAGCCAACCCAAGTTCGAAAGAGATTTGTTCTACCACGGGACGTTTCGGGATGACTTTCTGTGGGGC
GTG
TCCTCTTCCGCTTATCAGATTGAAGGCGCGTGGGATGCCGATGGCAAAGGCCCCAGCATCTGGGATA
AC
TTTACCCACACACCAGGGAGCAATGTGAAAGACAATGCCACTGGAGACATCGCCTGTGACAGCTATCA
C
CAGCTGGATGCCGATCTGAATATGCTCCGAGCTTTGAAGGTGAAGGCCTACCGCTTCTCTATCTCCTGG
TCT
CGGATTTTCCCAACTGGGAGAAACAGCTCTATCAACAGTCATGGGGTTGATTATTACAACAGGCTGA
TC
AATGGCTTGGTGGCAAGCAACATCTTTCCCATGGTGACATTGTTCCATTGGGACCTGCCCCAGGCCCT
C
CAGGATATCGGAGGCTGGGAGAATCCTGCCTTGATTGACTTGTTTGACAGCTACGCAGACTTTTGTTTC
CAG
ACCTTTGGTGATAGAGTCAAGTTTTGGATGACTTTTAATGAGCCCATGTACCTGGCATGGCTAGGTT
AT
GGCTCAGGGGAATTTCCCCCAGGGGTGAAGGACCCAGGCTGGGCACCATATAGGATAGCCCACGCCGT
C
ATCAAAGCCCATGCCAGAGTCTATCACACGTACGATGAGAAATACAGGCAGGAGCAGAAGGGGGTCATC
TCG
CTGAGCCTCAGTACACACTGGGCAGAGCCCAAGTCACCAGGGGTCCCCAGAGATGTGGAAGCCGCTG
AC
CGAATGCTGCAGTTCTCCCTGGGCTGGTTTGCTCACCCCATTTTTAGAAACGGAGACTATCCTGACAC
C
ATGAAGTGGAAAGTGGGGAACAGGAGTGAACTGCAGCACTTAGCCACCTCCCGCCTGCCAAGCTTCACT
GAG
GAAGAGAAGAGGTTCATCAGGGCGACGGCCGACGTCTTCTGCCTCAACACGTACTACTCCAGAATCG
TG
CAGCACAAAACACCCAGGCTAAACCCACCCTCCTACGAAGACGACCAGGAGATGGCTGAGGAGGAGGA
C
CCTTCGTGGCCTTCCACGGCAATGAACAGAGCTGCGCCCTGGGGGACGCGAAGGCTGCTGAACTGGATC
AAG
GAAGAGTATGGTGACATCCCCATTTACATCACCGAAAACGGAGTGGGGCTGACCAATCCGAACACGG
AG
GATACTGATAGGATATTTTACCACAAAACCTACATCAATGAGGCTTTGAAAGCCTACAGGCTCGATGG
T
ATAGACCTTCGAGGGTATGTCGCCTGGTCTCTGATGGACAACTTTGAGTGGCTAAATGGCTACACGGTC
AAG
TTTGGACTGTACCATGTTGATTTCAACAACACGAACAGGCCTCGCACAGCAAGAGCCTCCGCCAGGT
AC
TACACAGAGGTCATTACCAACAACGGCATGCCACTGGCCAGGGAGGATGAGTTTCTGTACGGACGGTT
T
CCTGAGGGCTTCATCTGGAGTGCAGCTTCTGCTGCATATCAGATTGAAGGTGCGTGGAGAGCAGATGGC
AAA
GGACTCAGCATTTGGGACACGTTTTCTCACACACCACTGAGGGTTGAGAACGATGCCATTGGAGACG
TG
GCCTGTGACAGTTATCACAAGATTGCTGAGGATCTGGTCACCCTGCAGAACCTGGGCGTGTCCCACTA
C
CGTTTTTCCATCTCCTGGTCTCGCATCCTCCCTGATGGAACCACCAGGTACATCAATGAAGCGGGCCTG
AAC
TACTACGTGAGGCTCATCGATACACTGCTGGCCGCCAGCATCCAGCCCCAGGTGACCATTTACCACT
GG
GACCTACCACAGACGCTCCAAGATGTAGGAGGCTGGGAGAATGAGACCATCGTGCAGCGGTTTAAGGA
G
TATGCAGATGTGCTCTTCCAGAGGCTGGGAGACAAGGTGAAGTTTTGGATCACGCTGAATGAGCCCTTT
GTC
ATTGCTTACCAGGGCTATGGCTACGGAACAGCAGCTCCAGGAGTCTCCAATAGGCCTGGCACTGCCC
CC
TACATTGTTGGCCACAATCTAATAAAGGCTCATGCTGAGGCCTGGCATCTGTACAACGATGTGTACCG
C
GCCAGTCAAGGTGGCGTGATTTCCATCACCATCAGCAGTGACTGGGCTGAACCCAGAGATCCCTCTAAC
CAG
GAGGATGTGGAGGCAGCCAGGAGATATGTTCAGTTCATGGGAGGCTGGTTTGCACATCCTATTTTCA
AG
AATGGAGATTACAATGAGGTGATGAAGACGCGGATCCGTGACAGGAGCTTGGCTGCAGGCCTCAACAA
G
TCTCGGCTGCCAGAATTTACAGAGAGTGAGAAGAGGAGGATCAACGGCACCTATGACTTTTTTGGGTTC
AAT
CACTACACCACTGTCCTCGCCTACAACCTCAACTATGCCACTGCCATCTCTTCTTTTGATGCAGACA
G
A
GGAGTTGCTTCCATCGCAGATCGCTCGTGGCCAGACTCTGGCTCCTTCTGGCTGAAGATGACGCCTTT
T
GGCTTCAGGAGGATCCTGAACTGGTTAAAGGAGGAATACAATGACCCTCCAATTTATGTCACAGAGAAT
GGA
GTGTCCCAGCGGGAAGAAACAGACCTCAATGACACTGCAAGGATCTACTACCTTCGGACTTACATCA
AT
GAGGCCCTCAAAGCTGTGCAGGACAAGGTGGACCTTCGAGGATACACAGTTTGGAGTGCGATGGACAA
T
TTTGAGTGGGCCACAGGCTTTTCAGAGAGATTTGGTCTGCATTTTGTGAACTACAGTGACCCTTCTCTG
CCA
AGGATCCCCAAAGCATCAGCGAAGTTCTACGCCTCTGTGGTCCGATGCAATGGCTTCCCTGACCCCG
CT
ACAGGGCCTCACGCTTGTCTCCACCAGCCAGATGCTGGACCCACCATCAGCCCCGTGAGACAGGAGGA
G
GTGCAGTTCCTGGGGCTAATGCTCGGCACCACAGAAGCACAGACAGCTTTGTACGTTCTCTTTTCTCTT
GTG
CTTCTTGGAGTCTGTGGCTTGGCATTTCTGTCATACAAGTACTGCAAGCGCTCTAAGCAAGGGAAAA
CA
CAACGAAGCCAACAGGAATTGAGCCCGGTGTCTTCATTCTGA


Translation (1927 aa):
MELSWHVVFIALLSFSCWGSDWESDRNFISTAGPLTNDLLHNLSGLLGDQSSNFVAGDKDMYVCHQPLPT
F
LPEYFSSLHASQITHYKVFLSWAQLLPAGSTQNPDEKTVQCYRRLLKALKTARLQPMVILHHQTLPAST
L
RRTEAFADLFADYATFAFHSFGDLVGIWFTFSDLEEVIKELPHQESRASQLQTLSDAHRKAYEIYHESY
A
FQ
GGKLSVVLRAEDIPELLLEPPISALAQDTVDFLSLDLSYECQNEASLRQKLSKLQTIEPKVKVFIFN
L
KLPDCPSTMKNPASLLFSLFE
AINKDQVLTIGFDINEFLSCSSSSKKSMSCSLTGSLALQPDQQQDHET
T
DSSPASAYQRIWEAFANQSRAERDAFLQDTFPEGFLWGASTGAFNVEGGWAEGGRGVSIWDPRRPLNTT
E
GQATLEVASDSYHKVASDVALLCGLRAQVYKFSISWSRIFPMGHGSSPSLPGVAYYNKLIDRLQDAGIE
P
MATLFHWDLPQALQDHGGWQNESVVDAFLDYAAFCFSTFGDRVKLWVTFHEPWVMSYAGYGTGQHPPGI
S
DPGVASFK
VAHLVLKAHARTWHHYNSHHRPQQQGHVGIVLNSDWAEPLSPERPEDLRASERFLHFMLGW
F
AHPVFVDGDYPATLRTQIQQMNRQCSHPVAQLPEFTEAEKQLLKGSADFLGLSHYTSRLISNAPQNTCI
P
SYDTIGGFSQHVNHVWPQTSSSWIRVVPWGIRRLLQFVSLEYTRGKVPIYLAGNGMPIGESENLFDDSL
R
VDYFNQYINEVLK
AIKEDSVDVRSYIARSLIDGFEGPSGYSQRFGLHHVNFSDSSKSRTPRKSAYFFTS
I
IEKNGFLTKGAKRLLPPNTVNLPSKVRAFTFPSEVPSKAKVVWEKFSSQPKFERDLFYHGTFRDDFLWG
V
SSSAYQIEGAWDADGKGPSIWDNFTHTPGSNVKDNATGDIACDSYHQLDADLNMLRALKVKAYRFSISW
S
RIFPTGRNSSINSHGVDYYNRLINGLVASNIFPMVTLFHWDLPQALQDIGGWENPALIDLFDSYADFCF
Q
TFGDRVKFWMTFNEPMYLAWLGYGSGEFPPGVKDPGWAPYRIAHAVIKAHARVYHTYDEKYRQEQKGVI
S
LSLSTHWAEPKSPGVPRDVEAADRMLQFSLGWFAHPIFRNGDYPDTMKWKVGNRSELQHLATSRLPSFT
E
EEKRFIRATADVFCLNTYYSRIVQHKTPRLNPPSYEDDQEMAEEEDPSWPSTAMNRAAPWGTRRLLNWI
K
EEYGDIPIYITENGVGLTNPNTEDTDRIFYHKTYINEALK
AYRLDGIDLRGYVAWSLMDNFEWLNGYTV
K
FGLYHVDFNNTNRPRTARASARYYTEVITNNGMPLAREDEFLYGRFPEGFIWSAASAAYQ
IEGAWRADG
K
GLSIWDTFSHTPLRVENDAIGDVACDSYHKIAEDLVTLQNLGVSHYRFSISWSRILPDGTTRYINEAGL
N
YYVRLIDTLLAASIQPQ
VTIYHWDLPQTLQDVGGWENETIVQRFKEYADVLFQRLGDKVKFWITLNEPF
V
IAYQGYGYGTAAP
GVSNRPGTAPYIVGHNLIKAHAEAWHLYNDVYRASQGGVISITISSDWAEPRDPSN
Q
EDVEAARRYVQ
FMGGWFAHPIFKNGDYNEVMKTRIRDRSLAAGLNKSRLPEFTESEKRRINGTYDFFGF
N
HYTTVLAYNLNYATAISSFDAD
RGVASIADRSWPDSGSFWLKMTPFGFRRILNWLKEEYNDPPIYVTEN
G
VSQREETDLNDTARIYYLRTYINEALK
AVQDKVDLRGYTVWSAMDNFEWATGFSERFGLHFVNYSDPSL
P
RIPKASAKFYASVVRCNGFPDPATGPHACLHQP
DAGPTISPVRQEEVQFLGLMLGTTEAQTALYVLFSL
V
LLGVCGLAFLSYKYCKRSKQGKTQRSQQELSPVSSF




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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