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Report for CCDS21853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21853.1 Public Mus musculus 7 Cdipt 23 108 98 CCDS HistoryNCBI Gene:52858Re-query CCDS DB by CCDS ID:21853.1Re-query CCDS DB by GeneID:52858See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032920.4 ENSMUSP00000032920.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032920.4Link to Ensembl Protein Viewer:ENSMUSP00000032920.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032920Re-query CCDS DB by Protein ID:ENSMUSP00000032920
Original member NCBI NM_026638.3 NP_080914.1 Updated not alive Link to Nucleotide Sequence:NM_026638.3Link to Protein Sequence:NP_080914.1Re-query CCDS DB by Nucleotide ID:NM_026638Re-query CCDS DB by Protein ID:NP_080914
Current member NCBI NM_026638.4 NP_080914.1 Accepted alive Link to Nucleotide Sequence:NM_026638.4Link to Protein Sequence:NP_080914.1Re-query CCDS DB by Nucleotide ID:NM_026638Re-query CCDS DB by Protein ID:NP_080914Link to BLAST:NP_080914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080914.1 213 Q8VDP6 213 100% 0 0

Chromosomal Locations for CCDS 21853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126976764 126976806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126976918 126977052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126978262 126978415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126978915 126978996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126979322 126979403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126979535 126979680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGCCAGAGGAAAATATCTTCCTGTTCGTGCCTAACCTTATCGGTTATGCCCGGATTGTCTTCGCCATCA
TTTCCTTCTACTTTATGCCCTGCTGCCCCTTCACGGCCTCCTCCTTCTATCTACTCAGCGGACTCCTAGA
CGCTTTCGATGGACACGCAGCTCGAGCCCTTAATCAAGGAACCCGGTTTGGGGCCATGCTCGACATGCTG
ACGGACCGTTGCGCCACCATGTGTCTCTTGGTCAACCTGGCCCTGCTCTACCCACGAGCCACCCTTCTCT
TCCAGCTCAGCATGAGCTTGGACGTGGCCAGTCACTGGCTGCATCTGCACAGTTCTGTGGTGCGAGGCAG
TGAGAGTCACAAGATGATCGACCTGTCTGGGAACCCTGTGCTTCGGATCTACTATACCTCTAGGCCTGCT
CTGTTCACCCTGTGTGCTGGAAATGAACTCTTCTACTGCCTCCTGTATCTCTTCAATTTCTCCGAGGGAC
CACTAGTCGGCTCTGTGGGCCTTTTCCGGATGGGCCTCTGGGTCACAGCTCCCATCGCGCTGCTCAAGTC
CGTCATTAGTGTCATCCACCTCATCACGGCTGCAAGAAACATGGCTGCCCTGGATGCAGCAGACCGCGCC
AAGAAGAAATGA

Translation (213 aa):
MPEENIFLFVPNLIGYARIVFAIISFYFMPCCPFTASSFYLLSGLLDAFDGHAARALNQGTRFGAMLDML
TDRCATMCLLVNLALLYPRATLLFQLSMSLDVASHWLHLHSSVVRGSESHKMIDLSGNPVLRIYYTSRPA
LFTLCAGNELFYCLLYLFNFSEGPLVGSVGLFRMGLWVTAPIALLKSVISVIHLITAARNMAALDAADRA
KKK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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