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Report for CCDS21894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21894.1 Public Mus musculus 7 Slc5a2 23 108 98 CCDS HistoryNCBI Gene:246787Re-query CCDS DB by CCDS ID:21894.1Re-query CCDS DB by GeneID:246787See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 21894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118169.7 ENSMUSP00000112597.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118169.7Link to Ensembl Protein Viewer:ENSMUSP00000112597.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118169Re-query CCDS DB by Protein ID:ENSMUSP00000112597
Original member Current member NCBI NM_133254.5 NP_573517.1 Accepted alive Link to Nucleotide Sequence:NM_133254.5Link to Protein Sequence:NP_573517.1Re-query CCDS DB by Nucleotide ID:NM_133254Re-query CCDS DB by Protein ID:NP_573517Link to BLAST:NP_573517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573517.1 670 Q923I7 670 100% 0 0

Chromosomal Locations for CCDS 21894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128265697 128265816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128266345 128266416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128266493 128266597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128267337 128267501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128267913 128268018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128268732 128268812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128268953 128269182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128269929 128270064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128270280 128270387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128270520 128270670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128270784 128270952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128271035 128271250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128271749 128271878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128271964 128272187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGAGCAACACGTAGAGGCAGGCTCTGAACTTGGGGAGCAGAAGGTCCTGATTGATAATCCTGCTGACA
TTCTGGTTATCGCTGCCTATTTCCTGCTGGTCATTGGTGTTGGCTTGTGGTCTATGTTCAGAACCAATAG
AGGCACAGTTGGTGGCTACTTCCTGGCAGGACGGAGCATGGTGTGGTGGCCGGTTGGAGCCTCTCTGTTC
GCCAGCAACATCGGCAGCGGTCATTTTGTGGGCCTGGCAGGGACTGGCGCAGCAAGTGGCTTGGCGGTGG
CTGGATTTGAGTGGAATGCGCTCTTCGTGGTGCTGCTCCTCGGATGGCTTTTTGTGCCAGTGTATCTGAC
CGCTGGTGTGATCACAATGCCTCAGTACCTCCGCAAGCGCTTTGGTGGGCACCGTATTCGCCTCTACCTG
TCCGTGCTCTCGCTTTTTTTGTACATTTTCACCAAGATCTCGGTGGATATGTTCTCTGGGGCAGTATTCA
TTCAACAGGCCCTGGGCTGGAACATTTACGCTTCGGTCATCGCTCTCTTGGGCATCACCATGATTTATAC
TGTGACAGGAGGGCTGGCGGCACTGATGTACACAGACACTGTGCAGACCTTCGTCATTCTTGCCGGGGCC
TTCATCCTCACTGGTTATGCTTTCCATGAAGTGGGCGGGTACTCGGGTCTCTTCGACAAATACCTGGGAG
CAATGACTTCACTGACGGTGTCCAAGGATCCATCTGTTGGCAACATCTCCAGCACCTGCTACCAGCCGAG
GCCTGACTCCTATCACCTGCTGCGTGACCCTGTGACAGGAGACCTGCCATGGCCTGCGCTGCTCCTGGGG
CTTACCATTGTCTCGGGCTGGTATTGGTGCAGCGATCAGGTAATAGTGCAGCGGTGCCTGGCTGGAAAGA
ATCTGACTCACATCAAAGCTGGGTGCATCTTGTGTGGCTACCTGAAGCTGATGCCCATGTTCCTCATGGT
CATGCCAGGCATGATCAGCCGCATTCTCTACCCAGATGAGGTGGCATGTGTGGTACCTGAGGTGTGTAAG
CGGGTGTGTGGCACTGAGGTGGGCTGCTCTAACATCGCCTACCCACGGCTCGTGGTGAAGCTCATGCCCA
ATGGTCTGCGCGGACTCATGCTGGCAGTCATGCTGGCTGCCCTCATGTCTTCTCTGGCATCCATCTTTAA
CAGCAGTAGCACGCTCTTCACCATGGATATCTACACGCGCCTGCGGCCCCGTGCAGGTGATAAGGAGCTG
CTGCTAGTTGGAAGGCTCTGGGTGGTATTCATCGTGGCGGTGTCCGTGGCTTGGCTGCCAGTGGTGCAGG
CAGCTCAGGGTGGGCAGCTCTTCGATTACATTCAGTCTGTCTCCAGCTATCTGGCACCTCCAGTGTCTGC
GGTCTTTGTGCTTGCACTCTTTGTGCCCCGTGTTAATGAGAAGGGAGCCTTCTGGGGACTAGTTGGGGGC
CTGCTGATGGGCCTAGCTCGTCTCATACCCGAGTTCTTCTTTGGCTCGGGCAGCTGTGTGCGACCCTCAG
CGTGCCCGGCACTCTTCTGTCGGGTACACTACCTCTATTTCGCCATCATTCTCTTCATCTGCTCTGGCAT
CCTCACACTTGGAATCTCCCTGTGCACTGCGCCCATCCCTCAGAAGCATCTCCATCGCCTGGTTTTCAGT
CTCCGGCACAGCAAGGAGGAGCGGGAGGACCTGGATGCTGATGAGTTAGAAGGTCCAGCCCCTGCTCCTG
TGCAGAACGGGGGCCAGGAATGTGCAATGGAGATGGAAGAGGTCCAGTCCCCGGCTCCAGGCCTGCTCCG
CCGGTGCCTGCTTTGGTTCTGTGGGATGAGCAAGAGTGGGTCAGGGAGTCCTCCGCCCACTACCGAGGAG
GTGGCGGCAACCACCAGGCGGCTGGAGGACATCAGTGAGGATCCCCGCTGGGCACGAGTAGTCAACCTCA
ATGCCCTACTCATGATGACCGTGGCTGTGTTCCTCTGGGGCTTCTATGCATAA

Translation (670 aa):
MEQHVEAGSELGEQKVLIDNPADILVIAAYFLLVIGVGLWSMFRTNRGTVGGYFLAGRSMVWWPVGASLF
ASNIGSGHFVGLAGTGAASGLAVAGFEWNALFVVLLLGWLFVPVYLTAGVITMPQYLRKRFGGHRIRLYL
SVLSLFLYIFTKISVDMFSGAVFIQQALGWNIYASVIALLGITMIYTVTGGLAALMYTDTVQTFVILAGA
FILTGYAFHEVGGYSGLFDKYLGAMTSLTVSKDPSVGNISSTCYQPRPDSYHLLRDPVTGDLPWPALLLG
LTIVSGWYWCSDQVIVQRCLAGKNLTHIKAGCILCGYLKLMPMFLMVMPGMISRILYPDEVACVVPEVCK
RVCGTEVGCSNIAYPRLVVKLMPNGLRGLMLAVMLAALMSSLASIFNSSSTLFTMDIYTRLRPRAGDKEL
LLVGRLWVVFIVAVSVAWLPVVQAAQGGQLFDYIQSVSSYLAPPVSAVFVLALFVPRVNEKGAFWGLVGG
LLMGLARLIPEFFFGSGSCVRPSACPALFCRVHYLYFAIILFICSGILTLGISLCTAPIPQKHLHRLVFS
LRHSKEEREDLDADELEGPAPAPVQNGGQECAMEMEEVQSPAPGLLRRCLLWFCGMSKSGSGSPPPTTEE
VAATTRRLEDISEDPRWARVVNLNALLMMTVAVFLWGFYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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