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Report for CCDS22013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22013.1 Public Mus musculus 7 Slc25a22 23 108 98 CCDS HistoryNCBI Gene:68267Re-query CCDS DB by CCDS ID:22013.1Re-query CCDS DB by GeneID:68267See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019226.13 ENSMUSP00000019226.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019226.13Link to Ensembl Protein Viewer:ENSMUSP00000019226.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019226Re-query CCDS DB by Protein ID:ENSMUSP00000019226
Original member Current member EBI ENSMUST00000106007.9 ENSMUSP00000101629.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106007.9Link to Ensembl Protein Viewer:ENSMUSP00000101629.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106007Re-query CCDS DB by Protein ID:ENSMUSP00000101629
Original member Current member EBI ENSMUST00000201710.3 ENSMUSP00000144231.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201710.3Link to Ensembl Protein Viewer:ENSMUSP00000144231.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201710Re-query CCDS DB by Protein ID:ENSMUSP00000144231
Original member Current member NCBI NM_001177576.1 NP_001171047.1 Accepted alive Link to Nucleotide Sequence:NM_001177576.1Link to Protein Sequence:NP_001171047.1Re-query CCDS DB by Nucleotide ID:NM_001177576Re-query CCDS DB by Protein ID:NP_001171047Link to BLAST:NP_001171047.1
Original member Current member NCBI NM_001360723.1 NP_001347652.1 Accepted alive Link to Nucleotide Sequence:NM_001360723.1Link to Protein Sequence:NP_001347652.1Re-query CCDS DB by Nucleotide ID:NM_001360723Re-query CCDS DB by Protein ID:NP_001347652Link to BLAST:NP_001347652.1
Original member Current member NCBI NM_026646.3 NP_080922.1 Accepted alive Link to Nucleotide Sequence:NM_026646.3Link to Protein Sequence:NP_080922.1Re-query CCDS DB by Nucleotide ID:NM_026646Re-query CCDS DB by Protein ID:NP_080922Link to BLAST:NP_080922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171047.1 323 Q9D6M3 323 100% 0 0
NP_001347652.1 323 Q9D6M3 323 100% 0 0
NP_080922.1 323 Q9D6M3 323 100% 0 0

Chromosomal Locations for CCDS 22013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141431105 141431258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141431350 141431425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141431502 141431656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141431739 141431913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141432021 141432139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141432663 141432753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141433581 141433636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141433900 141434025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141434156 141434175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCTGATAAGCAGATCAGCCTGCCGGCCAAGCTCATCAATGGTGGCATCGCTGGGCTAATCGGGGTCA
CCTGCGTGTTCCCCATCGACCTGGCTAAGACACGGCTGCAGAACCAGCAGAATGGCCAGCGCATGTATGC
CAGCATGTCTGATTGCCTCATCAAGACCATCCGCTCCGAGGGCTACTTCGGCATGTATAGGGGAGCAGCA
GTAAACCTGACCCTGGTCACCCCGGAGAAGGCCATCAAGTTGGCAGCTAATGACTTCTTCAGACACCAGC
TCTCTAAGGATGGACAGAAGCTGACCTTGCCTAAGGAGATGCTGGCAGGCTGCGGGGCCGGCACCTGCCA
GGTGATTGTGACCACCCCCATGGAGATGCTGAAGATCCAGTTGCAAGATGCAGGCCGCATTGCTGCTCAG
AGGAAGATTCTGGCTGCCCAGGCTCAGCTCTCAGCCCAGGGAGGTGCCCAGCCCTCGGTAGAGGCTCCAG
CCCCTCCTCGGCCCACGGCCACCCAGCTGACCCGTGACCTGCTGCGGAATCATGGCATTGCTGGCCTCTA
CAAGGGACTGGGGGCCACGCTACTCAGGGATGTTCCCTTCTCCATTGTCTACTTCCCCCTGTTTGCCAAC
CTGAATCAGCTGGGCCGCCCATCCTCTGAGGAGAAGTCGCCTTTCTATGTGTCCTTCCTAGCAGGCTGCG
TGGCTGGGAGTGCAGCCGCTGTGGCCGTCAACCCTTGTGATGTGGTGAAGACTCGGCTCCAGTCCCTTGA
GAGAGGTGTTAATGAGGACACTTACTCTGGGTTTCTGGACTGTGCAAGGAAGATCTGGAGACATGAAGGT
CCCTCAGCCTTCCTGAAAGGCGCATACTGCCGTGCGCTGGTCATTGCCCCGCTGTTTGGCATCGCCCAGG
TGGTCTACTTTCTGGGCATTGCCGAGTCCCTGCTGGGGCTGCTGCAAGAACCCCAGGCCTGA

Translation (323 aa):
MADKQISLPAKLINGGIAGLIGVTCVFPIDLAKTRLQNQQNGQRMYASMSDCLIKTIRSEGYFGMYRGAA
VNLTLVTPEKAIKLAANDFFRHQLSKDGQKLTLPKEMLAGCGAGTCQVIVTTPMEMLKIQLQDAGRIAAQ
RKILAAQAQLSAQGGAQPSVEAPAPPRPTATQLTRDLLRNHGIAGLYKGLGATLLRDVPFSIVYFPLFAN
LNQLGRPSSEEKSPFYVSFLAGCVAGSAAAVAVNPCDVVKTRLQSLERGVNEDTYSGFLDCARKIWRHEG
PSAFLKGAYCRALVIAPLFGIAQVVYFLGIAESLLGLLQEPQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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