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Report for CCDS22175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22175.1 Public Mus musculus 8 Slc25a15 23 108 98 CCDS HistoryNCBI Gene:18408Re-query CCDS DB by CCDS ID:22175.1Re-query CCDS DB by GeneID:18408See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033871.7 ENSMUSP00000033871.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033871.7Link to Ensembl Protein Viewer:ENSMUSP00000033871.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033871Re-query CCDS DB by Protein ID:ENSMUSP00000033871
Original member Current member NCBI NM_001358971.1 NP_001345900.1 Accepted alive Link to Nucleotide Sequence:NM_001358971.1Link to Protein Sequence:NP_001345900.1Re-query CCDS DB by Nucleotide ID:NM_001358971Re-query CCDS DB by Protein ID:NP_001345900Link to BLAST:NP_001345900.1
Original member Current member NCBI NM_181325.4 NP_851842.1 Accepted alive Link to Nucleotide Sequence:NM_181325.4Link to Protein Sequence:NP_851842.1Re-query CCDS DB by Nucleotide ID:NM_181325Re-query CCDS DB by Protein ID:NP_851842Link to BLAST:NP_851842.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345900.1 301 Q9WVD5 301 100% 0 0
NP_851842.1 301 Q9WVD5 301 100% 0 0

Chromosomal Locations for CCDS 22175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22377857 22377981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22379284 22379442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22380838 22381007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22383207 22383344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22389814 22390072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22395713 22395767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGAAATCCAATCCAGCCATCCAAGCTGCCATCGACCTCACAGCAGGGGCTGCAGGGGGCACAGCATGCG
TACTGACTGGGCAGCCCTTCGACACGATGAAGGTGAAGATGCAGACCTTTCCAGACCTCTACCGGGGCCT
CACAGACTGCTGCCTCAAGACCTACTCCCAGGTGGGCTTCCGTGGCTTCTACAAGGGCACCAGCCCCGCC
CTGATTGCCAATATAGCAGAGAACTCGGTGCTGTTCATGTGTTACGGCTTCTGCCAGCAGGTGGTCCGTA
AAGTGGTTGGATTGGATCAGCAGGCAAAACTGAGTGACCTTCAGAATGCAGCTGCTGGTTCCTTTGCCTC
CGCCTTTGCCGCGCTGGTTCTCTGCCCCACGGAGCTTGTGAAATGCCGGCTGCAGACCATGTATGAAATG
GAGACATCAGGAAAGATAGCGGCCAGTCAGAATACAGTTTGGTCAGTTGTGAAGGAGATCTTTAGGAAGG
ACGGCCCCTTGGGCTTCTACCATGGGCTCTCAAGCACTTTACTTCGAGAAGTACCAGGCTACTTCTTCTT
CTTTGGTGGCTATGAACTGAGCAGGTCATTCTTCGCATCAGGGAGATCAAAAGACGAACTAGGTCCTGTG
CCATTGATGCTGAGTGGTGGATTTGGTGGGATTTGCCTGTGGCTTGCTGTGTATCCGGTGGATTGTATCA
AATCTAGAATTCAAGTTCTTTCTATGACTGGAAAGCAGACAGGACTCGTCAGGACCTTCCTGAGTATCGT
AAAGAATGAAGGAATAACAGCCTTGTATTCTGGACTGAAACCCACCATGATCCGCGCATTCCCTGCCAAC
GGGGCACTGTTTTTGGCCTATGAGTACAGCAGGAAGTTGATGATGAACCAATTGGAAGCATGGTGA

Translation (301 aa):
MKSNPAIQAAIDLTAGAAGGTACVLTGQPFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGFRGFYKGTSPA
LIANIAENSVLFMCYGFCQQVVRKVVGLDQQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEM
ETSGKIAASQNTVWSVVKEIFRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPV
PLMLSGGFGGICLWLAVYPVDCIKSRIQVLSMTGKQTGLVRTFLSIVKNEGITALYSGLKPTMIRAFPAN
GALFLAYEYSRKLMMNQLEAW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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