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Report for CCDS22178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22178.1 Public Mus musculus 8 Slc20a2 23 108 98 CCDS HistoryNCBI Gene:20516Re-query CCDS DB by CCDS ID:22178.1Re-query CCDS DB by GeneID:20516See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067786.8 ENSMUSP00000065935.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067786.8Link to Ensembl Protein Viewer:ENSMUSP00000065935.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067786Re-query CCDS DB by Protein ID:ENSMUSP00000065935
Original member NCBI NM_011394.3 NP_035524.2 Updated not alive Link to Nucleotide Sequence:NM_011394.3Link to Protein Sequence:NP_035524.2Re-query CCDS DB by Nucleotide ID:NM_011394Re-query CCDS DB by Protein ID:NP_035524
Current member NCBI NM_011394.4 NP_035524.2 Accepted alive Link to Nucleotide Sequence:NM_011394.4Link to Protein Sequence:NP_035524.2Re-query CCDS DB by Nucleotide ID:NM_011394Re-query CCDS DB by Protein ID:NP_035524Link to BLAST:NP_035524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035524.2 656 Q80UP8 656 100% 0 0

Chromosomal Locations for CCDS 22178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22535284 22535572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22538804 22538944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22540360 22540445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22545504 22545600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22558942 22559058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22560497 22560700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22560887 22561478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22564029 22564214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22565614 22565698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22568247 22568420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGGCCATGGACGGGTATCTGTGGATGGTCATTTTGGGTTTCATTATTGCTTTCATCCTGGCGTTTTCAG
TCGGTGCCAACGATGTTGCCAATTCCTTCGGAACCGCGGTGGGCTCTGGCGTGGTGACCCTGAGACAGGC
ATGCATTCTGGCTTCCATATTTGAAACCACTGGCTCTGTGCTGCTGGGGGCGAAGGTGGGGGAGACCATT
CGGAAAGGCATCATTGACGTGAATCTCTACAACGAGACCGTGGAAACGCTAATGGCTGGGGAAGTGAGCG
CCATGGTTGGTTCAGCTGTCTGGCAGTTGATCGCGTCCTTCCTGAGACTGCCAATCTCGGGGACTCACTG
CATCGTCGGCTCCACCATCGGCTTCTCACTCGTGGCGATTGGCCCGAAAGGAGTGCAGTGGATGGAGCTC
GTCAAGATTGTCGCCTCCTGGTTTATATCGCCACTTCTTTCTGGCTTCATGTCCGGCGTGCTGTTCATAC
TAATCAGAATGTTCATCCTTACTAAGGAGGACCCTGTTCCAAACGGTCTCCAGGCACTGCCTCTGTTTTA
TGCTGCTACCATAGCAATAAATGTCTTTTCCATCATGTACACAGGAGCGCCAGTGCTGGGCCTGTCGCTC
CCCATCTGGGCAATAGCGCTCATATCCTTCGGCGTTGCTCTGCTGTTCGCCTTCTTCGTGTGGCTATTCG
TGTGTCCATGGATGAAGAGGAAGATAGCAGGCAGATTAGAGAAGGAGAGCGCTCTGTCCCGCGCTTCCGA
TGAAAGCCTCAGGAAAGTACAGGAAGCTGAGTCCCCTGGCTTCAAGGAGCTCCCTGGTGCCAAACCCAGC
GATGACAGCGCTGTCCCCCTCACCAGCCTGGCTGGGGAGGCCGTGGGGGCCTCAGAAGGCACGTCAGCAG
GGAACCACCCCCGGGCTTCCTATGGACGGGCACTTTCCATGACTCACGGCTCTGCCAAGTCACCCATCTC
CAATGGTACATTTGGCTTTGAAGGCCACATGAGGAATGACGGTCACGTTTATCATACTGTACACAAAGAC
TCGGGGCTCTACAAAGACTTGCTGCACAAAATCCACGTAGACAGGGGCTCCGAGGAGAAACCCACTCAGG
AAAACAACTACAGGCTGCTTCGGAGGAACAACAGTTACACCTGCTACACTGCGGCCATCTGCGGCATGCC
GGTGCACACCACTTTCAGAGCCTCGGACACCTCCTCTGCCCCCGAGGACAGTGAGAAGCTGGTGGGTGAC
AGTGTGTCCTATTCCAAGAAGAGGCTCCGCTACGACAGCTACTCCAGCTACTGCAACGCAGTGGCTGAGG
CCGAGATTGAGGCCGAAGAGGGTGGTGTGGAAATGAGGCTGGCCTCTGAGCTGGCCGACCCTGACCGGCC
TCACGAGGACCCCACGGAGGAAGAGAAGGAGGAGAAGGACTCGGCAGAGGTCCACCTGCTCTTCCACTTC
CTGCAAGTCCTCACTGCCTGCTTCGGGTCCTTCGCTCACGGTGGCAATGACGTGAGCAATGCTATTGGTC
CCCTTGTGGCTTTGTGGCTGATATATCAACAAGGCGGAGTTACACAAGAAGCTGCTACTCCAGTCTGGCT
GCTGTTTTACGGAGGAGTTGGCATTTGCACAGGTCTCTGGGTTTGGGGCAGAAGAGTGATCCAGACCATG
GGGAAGGACCTCACGCCCATCACACCGTCCAGTGGCTTCACTATTGAGCTGGCCTCTGCCTTCACCGTGG
TGATTGCCTCCAACATCGGGCTTCCTGTCAGCACCACGCACTGCAAGGTGGGCTCCGTGGTAGCTGTGGG
CTGGATCCGCTCGCGGAAGGCTGTGGACTGGCGCCTCTTCCGGAACATTTTTGTTGCCTGGTTCGTGACT
GTGCCCGTGGCTGGACTCTTCAGTGCTGCTATCATGGCTCTCCTCATGTACATATGTGGTCTCTTTTCTT
CCAGTCGGTAG

Translation (656 aa):
MAMDGYLWMVILGFIIAFILAFSVGANDVANSFGTAVGSGVVTLRQACILASIFETTGSVLLGAKVGETI
RKGIIDVNLYNETVETLMAGEVSAMVGSAVWQLIASFLRLPISGTHCIVGSTIGFSLVAIGPKGVQWMEL
VKIVASWFISPLLSGFMSGVLFILIRMFILTKEDPVPNGLQALPLFYAATIAINVFSIMYTGAPVLGLSL
PIWAIALISFGVALLFAFFVWLFVCPWMKRKIAGRLEKESALSRASDESLRKVQEAESPGFKELPGAKPS
DDSAVPLTSLAGEAVGASEGTSAGNHPRASYGRALSMTHGSAKSPISNGTFGFEGHMRNDGHVYHTVHKD
SGLYKDLLHKIHVDRGSEEKPTQENNYRLLRRNNSYTCYTAAICGMPVHTTFRASDTSSAPEDSEKLVGD
SVSYSKKRLRYDSYSSYCNAVAEAEIEAEEGGVEMRLASELADPDRPHEDPTEEEKEEKDSAEVHLLFHF
LQVLTACFGSFAHGGNDVSNAIGPLVALWLIYQQGGVTQEAATPVWLLFYGGVGICTGLWVWGRRVIQTM
GKDLTPITPSSGFTIELASAFTVVIASNIGLPVSTTHCKVGSVVAVGWIRSRKAVDWRLFRNIFVAWFVT
VPVAGLFSAAIMALLMYICGLFSSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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