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Report for CCDS22235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22235.1 Public Mus musculus 8 Gsr 23 108 98 CCDS HistoryNCBI Gene:14782Re-query CCDS DB by CCDS ID:22235.1Re-query CCDS DB by GeneID:14782See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033992.8 ENSMUSP00000033992.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033992.8Link to Ensembl Protein Viewer:ENSMUSP00000033992.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033992Re-query CCDS DB by Protein ID:ENSMUSP00000033992
Original member Current member NCBI NM_010344.4 NP_034474.4 Accepted alive Link to Nucleotide Sequence:NM_010344.4Link to Protein Sequence:NP_034474.4Re-query CCDS DB by Nucleotide ID:NM_010344Re-query CCDS DB by Protein ID:NP_034474Link to BLAST:NP_034474.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034474.4 500 P47791-1 500 100% 0 0

Chromosomal Locations for CCDS 22235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 33653540 33653779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33669153 33669179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33669893 33669981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33671523 33671592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33674087 33674234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33680263 33680317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33681465 33681564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33682593 33682679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33685544 33685702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33689341 33689452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33693799 33693930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33694999 33695132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33697146 33697295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGCGCTGCTGCCCCGGGCGCTGGGCGTGGGCGCGGCCCCGAGCCTGCGGCGGGCAGCGCGCGCGCTCA
CCTGCGCCATGGCGAGTCCCGGCGAGCCGCAGCCCCCGGCCCCGGACACCTCTTCCTTCGACTACCTGGT
GATCGGCGGCGGCTCCGGCGGGCTGGCCAGCGCGCGGCGGGCGGCGGAGCTCGGCGCCAGGGCCGCGGTG
GTGGAGAGTCACAAGCTGGGTGGCACTTGCGTGAATGTTGGATGTGTACCCAAAAAGGTAATGTGGAACA
CAGCAGTGCACTCGGAATTCATGCACGATCACGTGGATTACGGCTTTCAAAGCTGTGAGGGTAAATTCAG
TTGGCATGTCATCAAGCAGAAAAGGGATGCCTATGTGAGCCGCCTGAACACCATCTATCAAAATAATTTA
ACCAAGTCTCACATAGAAATTATCCACGGCTATGCAACATTCGCAGATGGTCCTCGGCCCACGGTGGAAG
TCAATGGGAAAAAGTTTACCGCTCCACACATCCTGATTGCCACAGGAGGCGTGCCCACAGTTCCTCACGA
GAGCCAGATCCCAGGCGCCAGCCTGGGGATCACCAGTGATGGCTTCTTTCAGCTGGAGGACTTGCCCAGC
CGCAGCGTCATCGTGGGGGCCGGGTACATTGCTGTGGAGATCGCGGGCATCCTCTCTGCCCTGGGCTCCA
AGACATCTCTTATGATCAGGCATGATAAGGTACTGAGAAATTTTGATTCACTCATCAGTTCCAACTGCAC
CGAGGAACTGGAGAATGCCGGCGTGGAGGTGTTGAAGTTCACACAGGTTAAGGAAGTAAAAAAGACATCA
TCAGGCCTGGAGCTCCAAGTGGTGACTTCCGTGCCTGGTAGGAAGCCCACCACGACCATGATTCCAGATG
TTGACTGCCTGCTCTGGGCCATTGGACGGGACCCAAATTCTAAGGGCCTGAATCTGAATAAAGTGGGCAT
TCAGACGGATGAAAAGGGCCACATCCTAGTAGACGAATTCCAGAATACCAATGTCAAAGGCGTCTATGCT
GTGGGAGACGTCTGTGGGAAAGCGCTTCTCACCCCAGTTGCAATCGCTGCTGGCCGGAAACTTGCCCATA
GACTGTTTGAATGCAAACAAGATTCCAAATTAGACTATGACAACATCCCTACTGTGGTCTTCAGCCACCC
CCCTATTGGGACCGTGGGGCTCACTGAAGACGAAGCTGTTCATAAGTATGGGAAAGACAATGTGAAAATC
TACTCGACTGCCTTTACCCCGATGTATCACGCTGTGACCACGAGGAAGACGAAATGCGTCATGAAGATGG
TTTGTGCCAACAAAGAGGAAAAGGTGGTTGGCATTCACATGCAGGGGATTGGCTGTGATGAGATGCTGCA
GGGCTTCGCTGTAGCGGTGAAAATGGGGGCCACCAAGGCCGACTTCGACAACACAGTTGCCATTCATCCT
ACCTCTTCAGAGGAGCTGGTCACCCTGCGCTGA

Translation (500 aa):
MALLPRALGVGAAPSLRRAARALTCAMASPGEPQPPAPDTSSFDYLVIGGGSGGLASARRAAELGARAAV
VESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHVDYGFQSCEGKFSWHVIKQKRDAYVSRLNTIYQNNL
TKSHIEIIHGYATFADGPRPTVEVNGKKFTAPHILIATGGVPTVPHESQIPGASLGITSDGFFQLEDLPS
RSVIVGAGYIAVEIAGILSALGSKTSLMIRHDKVLRNFDSLISSNCTEELENAGVEVLKFTQVKEVKKTS
SGLELQVVTSVPGRKPTTTMIPDVDCLLWAIGRDPNSKGLNLNKVGIQTDEKGHILVDEFQNTNVKGVYA
VGDVCGKALLTPVAIAAGRKLAHRLFECKQDSKLDYDNIPTVVFSHPPIGTVGLTEDEAVHKYGKDNVKI
YSTAFTPMYHAVTTRKTKCVMKMVCANKEEKVVGIHMQGIGCDEMLQGFAVAVKMGATKADFDNTVAIHP
TSSEELVTLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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