NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22373.1 Public Mus musculus 8 Isyna1 23 108 98 CCDS HistoryNCBI Gene:71780Re-query CCDS DB by CCDS ID:22373.1Re-query CCDS DB by GeneID:71780See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019283.9 ENSMUSP00000019283.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019283.9Link to Ensembl Protein Viewer:ENSMUSP00000019283.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000019283Re-query CCDS DB by Protein ID:ENSMUSP00000019283
Original member Current member EBI ENSMUST00000210005.1 ENSMUSP00000148077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210005.1Link to Ensembl Protein Viewer:ENSMUSP00000148077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210005Re-query CCDS DB by Protein ID:ENSMUSP00000148077
Original member Current member NCBI NM_023627.1 NP_076116.1 Accepted alive Link to Nucleotide Sequence:NM_023627.1Link to Protein Sequence:NP_076116.1Re-query CCDS DB by Nucleotide ID:NM_023627Re-query CCDS DB by Protein ID:NP_076116Link to BLAST:NP_076116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076116.1 557 Q9JHU9 557 100% 0 0

Chromosomal Locations for CCDS 22373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70594629 70594748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70594823 70594984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70595139 70595271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70595361 70595554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70595705 70595854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70595950 70596165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70596248 70596412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70596496 70596609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70596694 70596911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70596997 70597198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGAGCCCGCCGCCGAGATCCTCGTGGATAGCCCGGACGTGGTCTACAGCCCCGAAACCATCGAGGCGC
GCTACGAGTACCGGACAACGCGCGTCAGCCGCGAGGGCGGCGTGCTGCGGGTGCAGCCCAGGGCTACGCG
TTTCACCTTCCGCACCGCCCGGCAGGTGCCCCGACTCGGGGTCATGTTGGTCGGCTGGGGCGGGAACAAC
GGCTCCACGCTCACTGCTGCTGTTCTGGCCAATCGGCTGCGCCTAACCTGGCCCACGCGCACAGGTCGCA
AGGAGGCAAACTATTATGGATCGTTGACCCAGGCGGGCACCGTGAACTTGGGTCTGGATGAGAACGGCCG
GGAGGTGTTTGTGCCCTTCAGTGCGCTGCTACCCATGGTGGCCCCCAACGACCTGGTGTTTGATGGCTGG
GATATCTCGTCGCTGAACCTGGCCGAGGCCATGCGGCGCGCGCAGGTCCTGGACTGCGGTCTGCAGGAAC
AGCTGTGGCCCCACATGGAGAGCCTGCGTCCGCGGCCCTCAGTCTACATTCCTGAGTTCATCGCTGCCAA
CCAGACAGCACGTGCGGACAACCTCATCCCTGGCACACGTGCCCAACAGTTGGAGCAAATCCGAAAGGAC
ATTAGAGATTTCCGATCCAGTGCGGGATTGGATAAGGTCATCGTGCTGTGGACCGCCAATACGGAGCGCT
TCTGCGAGGTGGTCCCAGGTCGCAATGACACAGCAGAAAACTTGCTACATACTATCCAGCTTGGCCTGGA
GGTGTCACCGTCCACACTTTTTGCTGTGGCCAGCATCCTGGAGGACTGCGCCTTCCTCAATGGATCCCCA
CAGAACACACTGGTACCCGGTGCCCTGGAACTGGCTTCGCAGCGCCATGTGTTTGTAGGTGGTGATGACT
TCAAGTCAGGGCAGACTAAGGTCAAGTCTGTCCTGGTGGACTTCCTCATCGGCTCTGGGCTCAAGACCAT
GTCCATCGTGAGCTATAACCACCTGGGCAACAACGACGGGCAGAACCTGTCTGCACCGCTGCAGTTCCGC
TCCAAGGAGGTGACAAAGAGCAGTGTGGTGGACGACATGGTTCACAGCAACCATGTGCTCTACGCGCCTG
GAGAGCGGCCAGACCACTGTGTGGTGATCAAATATGTGCCCTATGTTGGCGACAGCAAGCGTGCCTTGGA
CGAGTACACCTCCGAGCTGATGCTGGGTGGGACAAACACCTTGGTGCTCCATAATACCTGCGAGGATTCG
CTCCTGGCCGCGCCCATCATGCTGGACCTAGTGCTGCTCACAGAGCTGTGTCAGCGCGTGAGCTTCTGCA
CAGACTCGGACCCCGAGCCTCAGGGCTTCCACACAGTGCTGTCCCTGCTTAGCTTCCTGTTTAAGGCCCC
GCTTGTGCCCCCGGGCAGCCCTGTAGTGAATGCCCTCTTCCGCCAGCGCAGCTGTATCGAGAATATTTTC
AGGGCTTGCGTGGGGCTCCCGCCCCAGAACCACATGCTATTAGAGCACAAGATGGAGCGTCCAGGCCCAG
GCATCAAGCCAGGAGAGGTGGTGGCCACCAGCCCACTGCCTTGCAAGAAAGAGCCCACACCTGCCACCAA
TGGCTGCACCGGCGATGCCAATGGGCACCCGCAGGCACCAACACCAAAGCTGTCCACTGCTTAA

Translation (557 aa):
MEPAAEILVDSPDVVYSPETIEARYEYRTTRVSREGGVLRVQPRATRFTFRTARQVPRLGVMLVGWGGNN
GSTLTAAVLANRLRLTWPTRTGRKEANYYGSLTQAGTVNLGLDENGREVFVPFSALLPMVAPNDLVFDGW
DISSLNLAEAMRRAQVLDCGLQEQLWPHMESLRPRPSVYIPEFIAANQTARADNLIPGTRAQQLEQIRKD
IRDFRSSAGLDKVIVLWTANTERFCEVVPGRNDTAENLLHTIQLGLEVSPSTLFAVASILEDCAFLNGSP
QNTLVPGALELASQRHVFVGGDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGQNLSAPLQFR
SKEVTKSSVVDDMVHSNHVLYAPGERPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS
LLAAPIMLDLVLLTELCQRVSFCTDSDPEPQGFHTVLSLLSFLFKAPLVPPGSPVVNALFRQRSCIENIF
RACVGLPPQNHMLLEHKMERPGPGIKPGEVVATSPLPCKKEPTPATNGCTGDANGHPQAPTPKLSTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH