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Report for CCDS22667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22667.1 Public Mus musculus 8 St3gal2 23 108 98 CCDS HistoryNCBI Gene:20444Re-query CCDS DB by CCDS ID:22667.1Re-query CCDS DB by GeneID:20444See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22667.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034197.4 ENSMUSP00000034197.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034197.4Link to Ensembl Protein Viewer:ENSMUSP00000034197.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034197Re-query CCDS DB by Protein ID:ENSMUSP00000034197
Original member NCBI NM_009179.3 NP_033205.2 Updated not alive Link to Nucleotide Sequence:NM_009179.3Link to Protein Sequence:NP_033205.2Re-query CCDS DB by Nucleotide ID:NM_009179Re-query CCDS DB by Protein ID:NP_033205
Current member NCBI NM_009179.4 NP_033205.2 Accepted alive Link to Nucleotide Sequence:NM_009179.4Link to Protein Sequence:NP_033205.2Re-query CCDS DB by Nucleotide ID:NM_009179Re-query CCDS DB by Protein ID:NP_033205Link to BLAST:NP_033205.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033205.2 350 Q11204 350 100% 0 0

Chromosomal Locations for CCDS 22667.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 110957712 110958050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110962169 110962362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110967417 110967596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110969188 110969233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110969544 110969663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110970102 110970275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGAAGTGCTCTCTTCGGGTGTGGTTCCTCTCTATGGCATTCCTGCTGGTGTTCATTATGTCCCTGCTCT
TCACCTACTCGCACCACAGCATGGCTACCTTGCCCTACCTGGACTCGGGGGCTCTGGGCGGCACACACCG
GGTGAAGCTGGTACCAGGCTATTCAGGACTACAGCGCCTCGGCAAGGAGGGGCTTTTGGGGAGAAATTGT
GCCTGCAGTCGCTGCATGGGTGACGCCAGCACCTCTGAATGGTTTGACAGCCACTTTGACGGCAACATCT
CACCCGTCTGGACCAGAGATAACATGAACCTCCCCCCGGATGTCCAGCGGTGGTGGATGATGCTACAACC
CCAATTCAAGTCACACAACACCAACGAAGTGCTGGAAAAACTGTTCCAGATCGTGCCTGGCGAGAACCCC
TACCGCTTCCGGGACCCCCAACAGTGCCGGCGCTGTGCTGTGGTCGGGAACTCAGGCAACCTTCGGGGCT
CTGGCTATGGACAAGAAGTGGACAGCCACAACTTTATCATGAGGATGAATCAGGCACCGACTGTGGGCTT
TGAGAAGGATGTTGGCAGCCGAACAACTCACCATTTCATGTACCCAGAGAGTGCCAAGAACCTGCCTGCC
AATGTCAGCTTCGTGCTGGTCCCCTTCAAGGCCCTGGACCTAATGTGGATTGCCAGCGCCCTCTCCACAG
GACAGATCCGATTCACCTATGCCCCAGTGAAGTCCTTCCTTCGAGTGGACAAAGAGAAGGTCCAGATTTA
CAACCCAGCCTTCTTCAAGTACATTCACGACAGGTGGACCGAGCACCACGGGCGCTACCCTTCCACAGGA
ATGCTGGTGCTCTTCTTTGCACTACATGTGTGTGATGAGGTGAACGTGTATGGGTTCGGGGCCGACAGTC
GAGGCAACTGGCACCACTACTGGGAGAACAACCGGTACGCGGGCGAGTTCCGGAAGACAGGCGTGCATGA
CGCCGACTTCGAAGCCCACATCATCGACATGCTGGCCAAGGCCAGCAAGATCGAGGTCTACCGAGGGAAC
TGA

Translation (350 aa):
MKCSLRVWFLSMAFLLVFIMSLLFTYSHHSMATLPYLDSGALGGTHRVKLVPGYSGLQRLGKEGLLGRNC
ACSRCMGDASTSEWFDSHFDGNISPVWTRDNMNLPPDVQRWWMMLQPQFKSHNTNEVLEKLFQIVPGENP
YRFRDPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAPTVGFEKDVGSRTTHHFMYPESAKNLPA
NVSFVLVPFKALDLMWIASALSTGQIRFTYAPVKSFLRVDKEKVQIYNPAFFKYIHDRWTEHHGRYPSTG
MLVLFFALHVCDEVNVYGFGADSRGNWHHYWENNRYAGEFRKTGVHDADFEAHIIDMLAKASKIEVYRGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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