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Report for CCDS22682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22682.1 Public Mus musculus 8 Chst5 23 108 98 CCDS HistoryNCBI Gene:56773Re-query CCDS DB by CCDS ID:22682.1Re-query CCDS DB by GeneID:56773See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034430.5 ENSMUSP00000034430.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034430.5Link to Ensembl Protein Viewer:ENSMUSP00000034430.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034430Re-query CCDS DB by Protein ID:ENSMUSP00000034430
Original member Current member NCBI NM_019950.2 NP_064334.1 Accepted alive Link to Nucleotide Sequence:NM_019950.2Link to Protein Sequence:NP_064334.1Re-query CCDS DB by Nucleotide ID:NM_019950Re-query CCDS DB by Protein ID:NP_064334Link to BLAST:NP_064334.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064334.1 395 Q9QUP4 395 100% 0 0

Chromosomal Locations for CCDS 22682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111889799 111890986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGCGGCTACCCCGTTTCTCCAGCACTGTCATGCTTTCGCTCCTGATGGTACAGACTGGCATCCTGGTCT
TCCTGGTCTCCCGGCAAGTGCCATCGTCCCCAGCAGGCCTTGGGGAGCGTGTGCACGTGCTGGTACTGTC
CTCGTGGCGCTCGGGCTCGTCCTTCGTGGGCCAGCTCTTCAGCCAACACCCCGATGTCTTCTACCTGATG
GAGCCGGCTTGGCACGTCTGGGATACGTTGTCGCAGGGCAGTGCCCCCGCACTCCACATGGCCGTGCGTG
ACCTGATCCGCTCAGTGTTCCTATGCGACATGGACGTATTTGATGCCTACCTGCCCTGGCGCCGCAACAT
CTCGGATCTCTTCCAGTGGGCGGTGAGCCGCGCATTGTGCTCACCTCCGGTCTGCGAAGCCTTCGCTCGT
GGCAACATCAGCAGCGAGGAGGTGTGTAAGCCTCTGTGCGCAACGCGGCCCTTCGGCCTGGCTCAGGAAG
CCTGCAGCTCCTATAGTCACGTCGTGCTCAAGGAGGTGCGCTTCTTTAACCTACAGGTGCTCTACCCGCT
GCTCAGCGACCCTGCGCTCAACCTGCGCATCGTGCACCTAGTGCGCGACCCGCGGGCCGTGCTGCGCTCC
CGAGAGCAGACAGCCAAGGCGCTGGCACGGGACAATGGCATCGTCCTGGGTACCAACGGCACGTGGGTGG
AGGCGGACCCCCGGCTGCGCGTGGTCAACGAGGTATGCCGCAGCCATGTGCGCATCGCAGAGGCAGCCTT
GCACAAGCCGCCGCCCTTCTTGCAAGATCGCTACCGCCTGGTGCGCTACGAGGATCTGGCCCGGGACCCA
CTCACCGTAATCCGTGAACTCTATGCCTTCACCGGCCTGGGTCTCACGCCGCAGCTCCAGACTTGGATCC
ACAATATCACGCATGGTTCAGGGCCAGGCGCGCGCCGTGAAGCCTTCAAGACCACATCCAGGGATGCGCT
CAGTGTATCCCAGGCCTGGCGCCACACGCTGCCCTTTGCCAAGATTCGCCGGGTCCAGGAACTGTGCGGG
GGTGCACTGCAGCTGCTGGGTTACCGGTCTGTGCATTCGGAGCTTGAGCAAAGGGACCTCTCTCTGGACC
TCCTGCTGCCAAGAGGCATGGACAGTTTCAAGTGGGCATCGTCCACGGAGAAGCAACCGGAATCTTAG

Translation (395 aa):
MRLPRFSSTVMLSLLMVQTGILVFLVSRQVPSSPAGLGERVHVLVLSSWRSGSSFVGQLFSQHPDVFYLM
EPAWHVWDTLSQGSAPALHMAVRDLIRSVFLCDMDVFDAYLPWRRNISDLFQWAVSRALCSPPVCEAFAR
GNISSEEVCKPLCATRPFGLAQEACSSYSHVVLKEVRFFNLQVLYPLLSDPALNLRIVHLVRDPRAVLRS
REQTAKALARDNGIVLGTNGTWVEADPRLRVVNEVCRSHVRIAEAALHKPPPFLQDRYRLVRYEDLARDP
LTVIRELYAFTGLGLTPQLQTWIHNITHGSGPGARREAFKTTSRDALSVSQAWRHTLPFAKIRRVQELCG
GALQLLGYRSVHSELEQRDLSLDLLLPRGMDSFKWASSTEKQPES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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