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Report for CCDS2299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2299.1 Public Homo sapiens 2 SLC40A1 24 110 108 CCDS HistoryNCBI Gene:30061Re-query CCDS DB by CCDS ID:2299.1Re-query CCDS DB by GeneID:30061See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261024.7 ENSP00000261024.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261024.7Link to Ensembl Protein Viewer:ENSP00000261024.3Re-query CCDS DB by Nucleotide ID:ENST00000261024Re-query CCDS DB by Protein ID:ENSP00000261024
Original member Current member NCBI NM_014585.6 NP_055400.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014585.6Link to Protein Sequence:NP_055400.1Re-query CCDS DB by Nucleotide ID:NM_014585Re-query CCDS DB by Protein ID:NP_055400Link to BLAST:NP_055400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055400.1 571 Q9NP59 571 100% 0 0

Chromosomal Locations for CCDS 2299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 189561878 189562191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 189563584 189564225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 189565354 189565599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 189571715 189571841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 189572846 189572961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 189575161 189575320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 189579813 189579880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 189580418 189580460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGACCAGGGCGGGAGATCACAACCGCCAGAGAGGATGCTGTGGATCCTTGGCCGACTACCTGACCTCTG
CAAAATTCCTTCTCTACCTTGGTCATTCTCTCTCTACTTGGGGAGATCGGATGTGGCACTTTGCGGTGTC
TGTGTTTCTGGTAGAGCTCTATGGAAACAGCCTCCTTTTGACAGCAGTCTACGGGCTGGTGGTGGCAGGG
TCTGTTCTGGTCCTGGGAGCCATCATCGGTGACTGGGTGGACAAGAATGCTAGACTTAAAGTGGCCCAGA
CCTCGCTGGTGGTACAGAATGTTTCAGTCATCCTGTGTGGAATCATCCTGATGATGGTTTTCTTACATAA
ACATGAGCTTCTGACCATGTACCATGGATGGGTTCTCACTTCCTGCTATATCCTGATCATCACTATTGCA
AATATTGCAAATTTGGCCAGTACTGCTACTGCAATCACAATCCAAAGGGATTGGATTGTTGTTGTTGCAG
GAGAAGACAGAAGCAAACTAGCAAATATGAATGCCACAATACGAAGGATTGACCAGTTAACCAACATCTT
AGCCCCCATGGCTGTTGGCCAGATTATGACATTTGGCTCCCCAGTCATCGGCTGTGGCTTTATTTCGGGA
TGGAACTTGGTATCCATGTGCGTGGAGTACGTTCTGCTCTGGAAGGTTTACCAGAAAACCCCAGCTCTAG
CTGTGAAAGCTGGTCTTAAAGAAGAGGAAACTGAATTGAAACAGCTGAATTTACACAAAGATACTGAGCC
AAAACCCCTGGAGGGAACTCATCTAATGGGTGTGAAAGACTCTAACATCCATGAGCTTGAACATGAGCAA
GAGCCTACTTGTGCCTCCCAGATGGCTGAGCCCTTCCGTACCTTCCGAGATGGATGGGTCTCCTACTACA
ACCAGCCTGTGTTTCTGGCTGGCATGGGTCTTGCTTTCCTTTATATGACTGTCCTGGGCTTTGACTGCAT
CACCACAGGGTACGCCTACACTCAGGGACTGAGTGGTTCCATCCTCAGTATTTTGATGGGAGCATCAGCT
ATAACTGGAATAATGGGAACTGTAGCTTTTACTTGGCTACGTCGAAAATGTGGTTTGGTTCGGACAGGTC
TGATCTCAGGATTGGCACAGCTTTCCTGTTTGATCTTGTGTGTGATCTCTGTATTCATGCCTGGAAGCCC
CCTGGACTTGTCCGTTTCTCCTTTTGAAGATATCCGATCAAGGTTCATTCAAGGAGAGTCAATTACACCT
ACCAAGATACCTGAAATTACAACTGAAATATACATGTCTAATGGGTCTAATTCTGCTAATATTGTCCCGG
AGACAAGTCCTGAATCTGTGCCCATAATCTCTGTCAGTCTGCTGTTTGCAGGCGTCATTGCTGCTAGAAT
CGGTCTTTGGTCCTTTGATTTAACTGTGACACAGTTGCTGCAAGAAAATGTAATTGAATCTGAAAGAGGC
ATTATAAATGGTGTACAGAACTCCATGAACTATCTTCTTGATCTTCTGCATTTCATCATGGTCATCCTGG
CTCCAAATCCTGAAGCTTTTGGCTTGCTCGTATTGATTTCAGTCTCCTTTGTGGCAATGGGCCACATTAT
GTATTTCCGATTTGCCCAAAATACTCTGGGAAACAAGCTCTTTGCTTGCGGTCCTGATGCAAAAGAAGTT
AGGAAGGAAAATCAAGCAAATACATCTGTTGTTTGA

Translation (571 aa):
MTRAGDHNRQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAG
SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIA
NIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISG
WNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELEHEQ
EPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASA
ITGIMGTVAFTWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITP
TKIPEITTEIYMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERG
IINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTLGNKLFACGPDAKEV
RKENQANTSVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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