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Report for CCDS2318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2318.1 Public Homo sapiens 2 PGAP1 24 110 108 CCDS HistoryNCBI Gene:80055Re-query CCDS DB by CCDS ID:2318.1Re-query CCDS DB by GeneID:80055See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2318.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354764.9 ENSP00000346809.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354764.9Link to Ensembl Protein Viewer:ENSP00000346809.3Re-query CCDS DB by Nucleotide ID:ENST00000354764Re-query CCDS DB by Protein ID:ENSP00000346809
Original member Current member NCBI NM_024989.4 NP_079265.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024989.4Link to Protein Sequence:NP_079265.2Re-query CCDS DB by Nucleotide ID:NM_024989Re-query CCDS DB by Protein ID:NP_079265Link to BLAST:NP_079265.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079265.2 922 Q75T13-1 922 100% 0 0

Chromosomal Locations for CCDS 2318.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 196841234 196841372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196842721 196842825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196843888 196844075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196844524 196844574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196845882 196846017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196847003 196847200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196847947 196848037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196864987 196865080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196870941 196870979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196872441 196872549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196872960 196873026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196873528 196873579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196873685 196873758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196875746 196875821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196880076 196880153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196885424 196885475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196885834 196885880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196890828 196890911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196892346 196892401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196893140 196893245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196897131 196897197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196898317 196898369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196902585 196902742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196912882 196913053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196916418 196916593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196919997 196920150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196926470 196926616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAACCCTGG
GGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGA
GTATCAGAAAATAGAACTTCCAAAGAAACTGGCAAAACGCTATCCCGCATATGAGTTGTATCTTTATGGA
GAGGGATCCTATGCTGAAGAACACAAAATTCTCCCTTTGACGGGTATTCCAGTTCTCTTTCTTCCTGGTA
ATGCTGGAAGTTATAAGCAAGTTCGTTCTATTGGCTCCATTGCACTTAGAAAAGCAGAGGACATTGACTT
CAAGTACCACTTTGACTTCTTTAGTGTGAACTTCAATGAAGAACTGGTGGCTTTGTATGGTGGAAGTCTT
CAGAAGCAGACCAAGTTTGTACATGAATGTATTAAAACAATTCTCAAACTCTATAAGGGTCAAGAATTTG
CTCCAAAAAGTGTGGCAATAATTGGTCATTCTATGGGTGGCCTTGTTGCAAGAGCATTGCTTACACTGAA
AAATTTTAAGCATGATCTGATAAATCTTCTTATTACACAAGCCACACCTCATGTTGCTCCTGTGATGCCA
TTAGATCGTTTCATTACAGATTTTTATACGACTGTAAACAACTATTGGATTCTAAATGCTCGACACATAA
ATTTAACCACACTTTCTGTAGCTGGAGGATTCCGGGATTACCAAGTTCGTTCAGGATTGACTTTTCTACC
AAAATTAAGCCATCATACCAGTGCCTTATCTGTTGTGAGTTCAGCAGTGCCTAAGACCTGGGTCTCAACA
GACCACCTCTCCATTGTGTGGTGTAAACAATTGCAGTTGACTACAGTTCGAGCATTCTTTGATCTTATTG
ATGCTGATACTAAACAAATAACTCAAAATTCCAAGAAGAAACTGTCAGTTTTGTATCACCACTTTATAAG
ACACCCATCAAAACATTTTGAGGAAAATCCAGCTATAATTTCTGACTTAACAGGGACATCTATGTGGGTT
CTAGTAAAAGTGTCCAAATGGACCTATGTAGCTTACAACGAATCTGAGAAGATATATTTTACATTTCCTC
TTGAAAATCATAGAAAAATCTACACTCATGTCTATTGTCAGAGCACTATGCTGGATACAAATAGTTGGAT
TTTTGCTTGCATAAACAGCACTTCTATGTGCCTGCAAGGGGTTGATTTATCATGGAAAGCTGAACTGCTG
CCAACAATTAAGTATCTGACATTAAGACTTCAAGACTATCCATCTTTGTCTCATCTTGTTGTTTATGTAC
CATCTGTTCGTGGAAGTAAGTTTGTTGTAGATTGTGAATTCTTTAAAAAAGAGAAAAGATACATACAGCT
TCCTGTAACTCATCTTTTTTCCTTTGGATTGTCTTCAAGGAAAGTGGTGTTAAATACAAATGGCCTATAC
TACAATCTAGAGCTTCTGAACTTTGGACAGATATACCAAGCTTTTAAAATCAACGTGGTAAGCAAGTGCT
CAGCAGTCAAAGAAGAAATAACCAGTATCTATAGACTTCATATTCCTTGGTCTTATGAAGATTCACTAAC
CATTGCACAGGCTCCATCTTCCACAGAAATTTCTCTGAAACTCCATATTGCTCAACCAGAAAACAATACC
CATGTGGCATTATTTAAAATGTACACGTCATCAGACTGTCGGTACGAGGTGACAGTTAAGACTTCCTTTT
CACAAATACTTGGACAGGTAGTTAGATTTCATGGTGGAGCTCTTCCTGCTTATGTCGTATCTAATATCCT
TCTTGCTTATAGAGGACAGTTATATTCTCTTTTCTCAACAGGTTGTTGCTTAGAATATGCTACCATGTTG
GATAAAGAAGCCAAACCATACAAAGTTGATCCTTTTGTAATTATCATTAAGTTTCTGTTGGGGTATAAAT
GGTTTAAAGAATTGTGGGATGTATTATTGTTACCAGAATTAGATGCCGTCATTTTAACTTGTCAGAGTAT
GTGTTTCCCCCTGATATCCTTGATTCTCTTTCTGTTTGGAACGTGTACTGCCTACTGGAGTGGCCTACTG
TCTTCTGCATCTGTGAGACTTCTTTCTTCATTGTGGCTAGCTTTGAAAAGACCCTCTGAACTTCCTAAAG
ATATCAAGATGATATCACCAGACTTGCCCTTTTTGACAATTGTCTTGATCATAGTTAGTTGGACAACTTG
TGGAGCACTAGCCATACTTCTTTCTTATCTTTACTATGTGTTTAAGGTTGTTCATCTGCAAGCCAGCTTA
ACAACTTTTAAGAATAGCCAGCCTGTGAATCCCAAACACTCTAGAAGAAGTGAAAAGAAATCCAATCATC
ATAAAGACTCCTCAATACACCATCTTCGTTTATCTGCCAACGATGCTGAAGATAGCCTTCGCATGCACAG
TACTGTGATTAACTTACTAACATGGATTGTATTACTCAGCATGCCTTCTCTAATTTATTGGCTAAAGAAT
CTTAGGTATTATTTTAAACTTAATCCTGATCCATGTAAACCTTTGGCATTTATCCTTATTCCGACTATGG
CAATTCTTGGAAATACTTACACTGTTTCAATAAAATCAAGTAAATTGTTGAAGACTACTTCACAATTTCC
ACTTCCTCTGGCTGTTGGTGTGATTGCTTTTGGGTCAGCACATTTATATAGGCTTCCATGCTTTGTCTTC
ATTCCTCTTTTACTCCATGCATTATGCAACTTTATGTAA

Translation (922 aa):
MFLHSVNLWNLAFYVFMVFLATLGLWDVFFGFEENKCSMSYMFEYPEYQKIELPKKLAKRYPAYELYLYG
EGSYAEEHKILPLTGIPVLFLPGNAGSYKQVRSIGSIALRKAEDIDFKYHFDFFSVNFNEELVALYGGSL
QKQTKFVHECIKTILKLYKGQEFAPKSVAIIGHSMGGLVARALLTLKNFKHDLINLLITQATPHVAPVMP
LDRFITDFYTTVNNYWILNARHINLTTLSVAGGFRDYQVRSGLTFLPKLSHHTSALSVVSSAVPKTWVST
DHLSIVWCKQLQLTTVRAFFDLIDADTKQITQNSKKKLSVLYHHFIRHPSKHFEENPAIISDLTGTSMWV
LVKVSKWTYVAYNESEKIYFTFPLENHRKIYTHVYCQSTMLDTNSWIFACINSTSMCLQGVDLSWKAELL
PTIKYLTLRLQDYPSLSHLVVYVPSVRGSKFVVDCEFFKKEKRYIQLPVTHLFSFGLSSRKVVLNTNGLY
YNLELLNFGQIYQAFKINVVSKCSAVKEEITSIYRLHIPWSYEDSLTIAQAPSSTEISLKLHIAQPENNT
HVALFKMYTSSDCRYEVTVKTSFSQILGQVVRFHGGALPAYVVSNILLAYRGQLYSLFSTGCCLEYATML
DKEAKPYKVDPFVIIIKFLLGYKWFKELWDVLLLPELDAVILTCQSMCFPLISLILFLFGTCTAYWSGLL
SSASVRLLSSLWLALKRPSELPKDIKMISPDLPFLTIVLIIVSWTTCGALAILLSYLYYVFKVVHLQASL
TTFKNSQPVNPKHSRRSEKKSNHHKDSSIHHLRLSANDAEDSLRMHSTVINLLTWIVLLSMPSLIYWLKN
LRYYFKLNPDPCKPLAFILIPTMAILGNTYTVSIKSSKLLKTTSQFPLPLAVGVIAFGSAHLYRLPCFVF
IPLLLHALCNFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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