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Report for CCDS23187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23187.1 Public Mus musculus 9 Cyp19a1 23 108 98 CCDS HistoryNCBI Gene:13075Re-query CCDS DB by CCDS ID:23187.1Re-query CCDS DB by GeneID:13075See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034811.7 ENSMUSP00000034811.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034811.7Link to Ensembl Protein Viewer:ENSMUSP00000034811.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034811Re-query CCDS DB by Protein ID:ENSMUSP00000034811
Original member Current member NCBI NM_001348171.1 NP_001335100.1 Accepted alive Link to Nucleotide Sequence:NM_001348171.1Link to Protein Sequence:NP_001335100.1Re-query CCDS DB by Nucleotide ID:NM_001348171Re-query CCDS DB by Protein ID:NP_001335100Link to BLAST:NP_001335100.1
Original member Current member NCBI NM_001348172.1 NP_001335101.1 Accepted alive Link to Nucleotide Sequence:NM_001348172.1Link to Protein Sequence:NP_001335101.1Re-query CCDS DB by Nucleotide ID:NM_001348172Re-query CCDS DB by Protein ID:NP_001335101Link to BLAST:NP_001335101.1
Original member Current member NCBI NM_001348173.1 NP_001335102.1 Accepted alive Link to Nucleotide Sequence:NM_001348173.1Link to Protein Sequence:NP_001335102.1Re-query CCDS DB by Nucleotide ID:NM_001348173Re-query CCDS DB by Protein ID:NP_001335102Link to BLAST:NP_001335102.1
Original member Current member NCBI NM_007810.4 NP_031836.1 Accepted alive Link to Nucleotide Sequence:NM_007810.4Link to Protein Sequence:NP_031836.1Re-query CCDS DB by Nucleotide ID:NM_007810Re-query CCDS DB by Protein ID:NP_031836Link to BLAST:NP_031836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335100.1 503 P28649 503 100% 0 0
NP_001335101.1 503 P28649 503 100% 0 0
NP_001335102.1 503 P28649 503 100% 0 0
NP_031836.1 503 P28649 503 100% 0 0

Chromosomal Locations for CCDS 23187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 54166757 54167005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54168507 54168748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54171803 54171965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54172676 54172790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54173329 54173443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54176476 54176652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54180182 54180336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54186681 54186831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54193257 54193401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGTTCTTGGAAATGCTGAACCCCATGCAGTATAATGTCACCATCATGGTCCCGGAAACTGTGACTGTCA
GTGCCATGCCACTCCTGCTGATCATGGGCCTCCTTCTCCTGATTTGGAATTGTGAGAGCTCGTCTTCAAT
ACCAGGTCCTGGCTACTGTCTGGGAATTGGGCCCCTCATTTCCCATGGCAGATTCTTGTGGATGGGGATT
GGAAGTGCCTGCAACTACTACAATAAGATGTATGGAGAGTTCATGAGAGTCTGGATCAGTGGAGAGGAGA
CACTCATTATCAGCAAGTCCTCAAGCATGTTCCATGTCATGAAGCACAGTCACTACATCTCCCGATTCGG
CAGCAAGCGTGGGCTGCAGTGCATCGGCATGCATGAGAACGGCATCATATTTAACAACAACCCGAGCCTT
TGGAGAACAATTCGCCCTTTCTTTATGAAAGCTCTGACGGGCCCTGGTCTTGTTCGAATGGTGGAAGTTT
GTGTGGAGTCCATCAAGCAGCATTTGGACCGGCTGGGCGAAGTCACCGACACCTCGGGCTACGTGGATGT
GTTGACCCTCATGAGACACATCATGCTGGACACCTCTAACATGCTCTTCCTGGGGATCCCCCTGGACGAA
AGTGCTATTGTGAAGAAAATCCAGGGTTACTTTAACGCCTGGCAAGCTCTCCTCATCAAACCAAACATCT
TCTTTAAGATTTCTTGGCTCTACAGAAAGTATGAACGATCCGTCAAGGACTTGAAAGACGAGATAGCTGT
TTTGGTGGAAAAGAAGAGACACAAAGTTTCCACAGCTGAGAAACTGGAAGACTGTATGGATTTTGCAACT
GATTTGATTTTCGCTGAGAGACGTGGAGACCTGACGAAAGAGAACGTGAATCAGTGCATACTGGAGATGC
TGATTGCAGCCCCTGACACCATGTCGGTCACTCTGTACTTCATGTTACTTCTCGTCGCAGAGTATCCAGA
GGTCGAAGCAGCAATCCTGAAGGAGATCCACACTGTTGTGGGTGACAGAGACATAAAGATCGAGGATATC
CAAAATTTAAAAGTGGTGGAAAACTTCATTAATGAAAGCATGCGGTACCAGCCTGTTGTGGACTTGGTCA
TGCGCAGAGCTCTGGAGGATGACGTAATTGACGGCTACCCGGTTAAAAAGGGAACTAACATCATTCTGAA
CATCGGAAGAATGCACAGGCTCGAGTACTTCCCTAAGCCCAATGAATTTACCCTTGAAAACTTTGAGAAG
AATGTTCCCTACAGGTACTTTCAGCCTTTTGGCTTTGGGCCCCGCGGCTGTGCTGGGAAGTACATCGCCA
TGGTGATGATGAAAGTTGTCTTGGTTACACTTTTGAGACGATTCCAGGTGAAGACACTGCAAAAAAGGTG
TATTGAAAACATACCGAAAAAGAATGACCTGTCCTTGCACCCAAATGAGGACAGGCACCTTGTGGAAATA
ATTTTCTCTCCAAGGAATTCAGACAAGTACCTCCAACAGTGA

Translation (503 aa):
MFLEMLNPMQYNVTIMVPETVTVSAMPLLLIMGLLLLIWNCESSSSIPGPGYCLGIGPLISHGRFLWMGI
GSACNYYNKMYGEFMRVWISGEETLIISKSSSMFHVMKHSHYISRFGSKRGLQCIGMHENGIIFNNNPSL
WRTIRPFFMKALTGPGLVRMVEVCVESIKQHLDRLGEVTDTSGYVDVLTLMRHIMLDTSNMLFLGIPLDE
SAIVKKIQGYFNAWQALLIKPNIFFKISWLYRKYERSVKDLKDEIAVLVEKKRHKVSTAEKLEDCMDFAT
DLIFAERRGDLTKENVNQCILEMLIAAPDTMSVTLYFMLLLVAEYPEVEAAILKEIHTVVGDRDIKIEDI
QNLKVVENFINESMRYQPVVDLVMRRALEDDVIDGYPVKKGTNIILNIGRMHRLEYFPKPNEFTLENFEK
NVPYRYFQPFGFGPRGCAGKYIAMVMMKVVLVTLLRRFQVKTLQKRCIENIPKKNDLSLHPNEDRHLVEI
IFSPRNSDKYLQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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