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Report for CCDS23221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23221.1 Public Mus musculus 9 Ppcdc 23 108 98 CCDS HistoryNCBI Gene:66812Re-query CCDS DB by CCDS ID:23221.1Re-query CCDS DB by GeneID:66812See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085709.5 ENSMUSP00000082856.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085709.5Link to Ensembl Protein Viewer:ENSMUSP00000082856.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085709Re-query CCDS DB by Protein ID:ENSMUSP00000082856
Original member Current member NCBI NM_001357912.1 NP_001344841.1 Accepted alive Link to Nucleotide Sequence:NM_001357912.1Link to Protein Sequence:NP_001344841.1Re-query CCDS DB by Nucleotide ID:NM_001357912Re-query CCDS DB by Protein ID:NP_001344841Link to BLAST:NP_001344841.1
Original member Current member NCBI NM_001357913.1 NP_001344842.1 Accepted alive Link to Nucleotide Sequence:NM_001357913.1Link to Protein Sequence:NP_001344842.1Re-query CCDS DB by Nucleotide ID:NM_001357913Re-query CCDS DB by Protein ID:NP_001344842Link to BLAST:NP_001344842.1
Original member Current member NCBI NM_176831.5 NP_789801.1 Accepted alive Link to Nucleotide Sequence:NM_176831.5Link to Protein Sequence:NP_789801.1Re-query CCDS DB by Nucleotide ID:NM_176831Re-query CCDS DB by Protein ID:NP_789801Link to BLAST:NP_789801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344841.1 204 Q8BZB2 204 100% 0 0
NP_001344842.1 204 Q8BZB2 204 100% 0 0
NP_789801.1 204 Q8BZB2 204 100% 0 0

Chromosomal Locations for CCDS 23221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57414641 57414726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57415086 57415254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57420163 57420291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57421126 57421221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57434903 57435037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGAACCAAAGGCCCCATGCCCAGCCGCCGTCCCCTCAGAGGAGAGGAAGTTCCGTGTTCTTGTGGGCG
TCACTGGCAGCGTGGCCGCTCTGAAGCTGCCTCTCCTGGTATCTAAGCTGTTGGACGTTCCTGGGCTGGA
AGTCACAGTGGTAACAACAGAGAGAGCCAAACATTTCTACAGCCCTCAGGATGTCCCCGTCACCCTCTAC
AGTGACGCTGATGAATGGGAGATGTGGAAGCGCCGTTCTGACCCGGTTCTCCACATTGACCTGCGGAGGT
GGGCTGACCTCATGCTAGTGGCTCCCCTCGATGCCAACACTCTGGGGAAGGTGGCCAGTGGCATCTGTGA
CAATTTGCTTACCTGTGTCATCCGGGCCTGGGACCTAAACAAGCCCCTACTCTTCTGCCCCGCCATGAAC
ACTGCCATGTGGGAGCATCCTCTCACCGCACAGCAGGTAGCCCAGCTCAAGGCCTTTGGCTACGTGGAGA
TTCCCTGTGTGAGCAAGAAGCTGGTGTGTGGAGACCAAGGTCTAGGAGCCATGGCTGAAGTGGAGACCAT
TGTGGCTAAGGTGCAGGCCGTGCTCTCCCAGCATGGTAGCATCCAGCAGAGTTGA

Translation (204 aa):
MEPKAPCPAAVPSEERKFRVLVGVTGSVAALKLPLLVSKLLDVPGLEVTVVTTERAKHFYSPQDVPVTLY
SDADEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDLNKPLLFCPAMN
TAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVETIVAKVQAVLSQHGSIQQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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