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Report for CCDS23442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23442.1 Public Mus musculus 9 Pccb 23 108 98 CCDS HistoryNCBI Gene:66904Re-query CCDS DB by CCDS ID:23442.1Re-query CCDS DB by GeneID:66904See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035116.11 ENSMUSP00000035116.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035116.11Link to Ensembl Protein Viewer:ENSMUSP00000035116.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035116Re-query CCDS DB by Protein ID:ENSMUSP00000035116
Original member Current member NCBI NM_025835.3 NP_080111.1 Accepted alive Link to Nucleotide Sequence:NM_025835.3Link to Protein Sequence:NP_080111.1Re-query CCDS DB by Nucleotide ID:NM_025835Re-query CCDS DB by Protein ID:NP_080111Link to BLAST:NP_080111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080111.1 541 Q99MN9 541 100% 0 0

Chromosomal Locations for CCDS 23442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 100982685 100982806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100984373 100984472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100985128 100985226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100985531 100985631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100985779 100985886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100987781 100987904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100994568 100994649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100995560 100995680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100999165 100999273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101012705 101012815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101023136 101023249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101027080 101027136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101030175 101030243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101031856 101031975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101034669 101034857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCGGCGGCGATTAGGATTCGGGCGGTGGCGGCTGGAGCGAGGCTCAGCGTTCTGAATTGCGGCCTCG
GCATCACGACCCGCGGCCTTTGCAGCCAGCCGGTTTCAGTTAAAGAGCGCATCGACAACAAGCGCCATGC
AGCGTTGCTGGGAGGAGGCCAGCGCCGCATCGACGCGCAGCACAAGCGAGGGAAGCTAACAGCCAGGGAG
CGGATCAGTCTTCTGCTGGATCCTGGCAGCTTCATGGAGAGCGACATGTTTGTGGAACACAGATGTGCCG
ACTTCGGAATGGCTGCTGATAAGAATAAGTTTCCCGGAGATAGTGTGGTCACTGGACGGGGCCGAATCAA
TGGACGATTGGTTTATGTCTTCAGTCAGGATTTTACAGTTTTTGGAGGCAGTCTGTCAGGAGCACATGCT
CAAAAGATCTGCAAAATCATGGACCAGGCCATAACAGTGGGGGCTCCAGTGATCGGGCTCAATGACTCCG
GGGGCGCCAGAATCCAGGAGGGGGTGGAGTCCTTGGCTGGCTACGCGGACATCTTCCTGAGGAATGTCAC
AGCGTCTGGAGTCATCCCGCAGATTTCTCTGATCATGGGCCCGTGTGCTGGTGGGGCCGTCTACTCCCCT
GCCCTAACAGACTTCACATTCATGGTGAAGGACACATCTTACCTGTTTATCACTGGCCCTGAAGTTGTGA
AGTCTGTTACCAATGAGGATGTCACTCAAGAGCAGCTGGGTGGTGCCAAGACCCACACCACTGTGTCAGG
TGTGGCCCATAGAGCTTTCGACAATGATGTTGATGCTCTGTGTAACCTGCGTGAATTCTTCAATTTCCTG
CCCCTCAGCAGCCAGGACCCGGCTCCCATCCGAGAGTGCCATGACCCCAGTGACCGTCTGGTTCCTGAGC
TGGACACAGTTGTCCCTTTGGAGTCAAGCAAAGCCTACAACATGCTGGACATCATCCACGCAGTGATTGA
CGAGAGAGAGTTTTTTGAGATAATGCCCAGTTACGCAAAAAATATTGTCGTTGGCTTCGCAAGAATGAAT
GGGAGGACCGTTGGAATTGTCGGCAACCAGCCCAATGTGGCCTCAGGGTGCTTGGACATTAATTCATCCG
TGAAGGGGGCTCGTTTTGTCAGATTCTGTGACGCATTCAACATTCCCCTCATCACTTTCGTTGACGTCCC
TGGCTTCCTGCCTGGCACGGCGCAGGAGTATGGGGGCATCATCAGGCATGGTGCCAAGCTGCTCTACGCG
TTCGCCGAGGCAACTGTGCCCAAAATCACAGTCATCACCAGGAAGGCCTATGGAGGTGCCTATGATGTCA
TGAGCTCCAAACACCTTCTTGGTGACACCAACTATGCCTGGCCCACAGCTGAGATTGCGGTCATGGGAGC
AAAGGGTGCTGTGGAGATCATCTTCAAAGGACACCAAGATGTGGAAGCCGCCCAGGCAGAGTATGTGGAG
AAGTTCGCCAACCCTTTCCCAGCAGCCGTGAGAGGGTTTGTGGATGACATCATCCAGCCATCCTCTACTC
GTGCTCGGATATGCTGTGACCTGGAAGTCCTGGCCAGCAAGAAGGTCCATCGTCCCTGGAGGAAACATGC
AAATATCCCACTGTGA

Translation (541 aa):
MAAAIRIRAVAAGARLSVLNCGLGITTRGLCSQPVSVKERIDNKRHAALLGGGQRRIDAQHKRGKLTARE
RISLLLDPGSFMESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHA
QKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSP
ALTDFTFMVKDTSYLFITGPEVVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDALCNLREFFNFL
PLSSQDPAPIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMPSYAKNIVVGFARMN
GRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYA
FAEATVPKITVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHQDVEAAQAEYVE
KFANPFPAAVRGFVDDIIQPSSTRARICCDLEVLASKKVHRPWRKHANIPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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